View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12765_high_6 (Length: 496)
Name: NF12765_high_6
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12765_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 67 - 480
Target Start/End: Original strand, 341169 - 341596
Alignment:
| Q |
67 |
aaaattttgtcgcttcggcaagattaagaagaattcaagataaacatatccttaaaaaacatcatacataaccttcatcttggtggaatgtaaagttggc |
166 |
Q |
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| T |
341169 |
aaaattttgtcgcttcggcaagattaagaagaattcaagataaacatatccttaaaaaacatcatacataaccttcatcttggtggaatgtaaagttggc |
341268 |
T |
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| Q |
167 |
ctagcat----tactaaaacaaagaccgttgcgagccagctaaataacatgaaaaatgtgaaccattctaacaagtaataattttcgagt---------a |
253 |
Q |
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| T |
341269 |
ctagcatgcattactaaaacaaagaccgttacgagccagctaaataacatgaaaaatgtgaaccattctaacaagtaataattttcgagtcttaggagta |
341368 |
T |
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| Q |
254 |
gtacaacaattaagcatcacataaataaacaatcttaagtgaaagaagagggaaggacgactccaacaactttatttctcaagaaacacattatgatgaa |
353 |
Q |
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| T |
341369 |
gtacaacaattaagcatcacataaataaacaatcttaagcgagagaagagggaaggacgactccaacaactttatttctcaagaaacacattatgatgaa |
341468 |
T |
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| Q |
354 |
gaatgacactagggataacgctgcttttactc--tgataaaaattgattgaaatattctaacacattcaccaaaggactccccaaccaattatccatgcc |
451 |
Q |
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| T |
341469 |
gaatgacactagggataacactgcttttactctatgatacaaattgattgaaatattc-aacacattcaccaaaggacaccccaaccaattatccatgcc |
341567 |
T |
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| Q |
452 |
attagacatatgtttcttaattcgtgtct |
480 |
Q |
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| T |
341568 |
attagacatatgtttcttaattcgtgtct |
341596 |
T |
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