View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12765_high_8 (Length: 487)
Name: NF12765_high_8
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12765_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 4 - 168
Target Start/End: Original strand, 44789126 - 44789290
Alignment:
| Q |
4 |
aggacttgtcattgtcacacactatattgggcatcttttattgatataaatatgcattttagaagaacataagataaaaatagatagataaatacgaacg |
103 |
Q |
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| T |
44789126 |
aggacttgtcattgtcacacactatattggtcatcttttattgatataaatatgcattttagaagaacataagataaaaatagatagataaatacgaacg |
44789225 |
T |
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| Q |
104 |
ttgacataggcccgactcccacggaaatccagcggcgggaattgcagctgcgcctatcacatcca |
168 |
Q |
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| T |
44789226 |
ttgacataggcccgactcccacggaaatccagcggcgggaattgcagctgcgcctatcacatcca |
44789290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 170 - 388
Target Start/End: Original strand, 44789326 - 44789549
Alignment:
| Q |
170 |
cttacctgaattctgcaaattaatcaattaatttaggtactnnnnnnnntaatatat--cagggaaagaggaagatgaagaga--aggtaggatacgaac |
265 |
Q |
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| T |
44789326 |
cttacctgaattctgcaaattaatcaattaatttaggtactaaaaaaaataatatatatcagggaaagaggaagatgaagagagtaggtaggatacgaac |
44789425 |
T |
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| Q |
266 |
gagtaaacgtgagggtatgctcatt-gagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagattagatctaagacaaactcttt |
364 |
Q |
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| T |
44789426 |
gagtaaacgtgagggtatgctcatttgagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagattagatctaagacaaactcttg |
44789525 |
T |
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| Q |
365 |
agtaaatttaactactagctttga |
388 |
Q |
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| T |
44789526 |
agtaaatttatctattagctttga |
44789549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 253 - 348
Target Start/End: Original strand, 44792961 - 44793056
Alignment:
| Q |
253 |
gtaggatacgaacgagtaaacgtgagggtatgctcattgagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagattagat |
348 |
Q |
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| T |
44792961 |
gtaggatacgaacgagtaaacgtggaggtatgttcattgagaagacgacacgaccaggttcaatgcgatccaatcgtaggccgcgcaaggttagat |
44793056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 348
Target Start/End: Original strand, 44797855 - 44797944
Alignment:
| Q |
259 |
tacgaacgagtaaacgtgagggtatgctcattgagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagattagat |
348 |
Q |
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| T |
44797855 |
tacgaacgagtaaacgtgggggtatgttcattgagaagacgacacgaccaggttcaatgagatccaatcgcagggcgcgcaagattagat |
44797944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 44801250 - 44801334
Alignment:
| Q |
259 |
tacgaacgagtaaacgtgagggtatgctcattgagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagat |
343 |
Q |
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| T |
44801250 |
tacgaacgagtaaacgtggaggtatgttcattgagaaaacgacatggccaggctcaatgagatccaatcgtaggccacgcaagat |
44801334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 348
Target Start/End: Original strand, 44805742 - 44805831
Alignment:
| Q |
259 |
tacgaacgagtaaacgtgagggtatgctcattgagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagattagat |
348 |
Q |
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| T |
44805742 |
tacgaacgagtaaacgtgggggtatgttcattgtgaaaatgacacggccaggctcaatgacatcgaagcgtaggccacgcaagattagat |
44805831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 44792182 - 44792219
Alignment:
| Q |
122 |
ccacggaaatccagcggcgggaattgcagctgcgccta |
159 |
Q |
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| T |
44792182 |
ccacggaaatccagctgcgggaattgcggctgcgccta |
44792219 |
T |
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