View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12765_low_1 (Length: 723)

Name: NF12765_low_1
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12765_low_1
NF12765_low_1
[»] chr8 (8 HSPs)
chr8 (8-705)||(12947951-12948642)
chr8 (51-140)||(14998883-14998971)
chr8 (87-166)||(1349220-1349299)
chr8 (88-165)||(15908891-15908968)
chr8 (86-155)||(1349056-1349125)
chr8 (26-71)||(15892147-15892192)
chr8 (18-63)||(18839000-18839045)
chr8 (23-68)||(26218010-26218055)
[»] chr6 (3 HSPs)
chr6 (14-165)||(2031626-2031777)
chr6 (118-166)||(14469142-14469190)
chr6 (23-68)||(14485539-14485584)
[»] chr7 (6 HSPs)
chr7 (56-164)||(8229531-8229639)
chr7 (87-164)||(15819709-15819786)
chr7 (23-68)||(8229646-8229691)
chr7 (118-164)||(2847151-2847197)
chr7 (23-72)||(22199103-22199152)
chr7 (23-72)||(22238669-22238718)
[»] chr3 (3 HSPs)
chr3 (86-165)||(12782764-12782843)
chr3 (119-169)||(48632291-48632341)
chr3 (23-70)||(21566867-21566914)
[»] chr4 (3 HSPs)
chr4 (24-98)||(43148619-43148692)
chr4 (85-163)||(18862376-18862454)
chr4 (190-232)||(11673106-11673148)
[»] chr2 (2 HSPs)
chr2 (23-76)||(6282441-6282494)
chr2 (23-68)||(24582472-24582517)
[»] scaffold0005 (1 HSPs)
scaffold0005 (86-163)||(269110-269187)
[»] chr5 (3 HSPs)
chr5 (86-166)||(25358934-25359014)
chr5 (87-153)||(18673609-18673675)
chr5 (88-165)||(22858516-22858593)
[»] chr1 (2 HSPs)
chr1 (101-164)||(48957617-48957680)
chr1 (113-165)||(22529100-22529153)


Alignment Details
Target: chr8 (Bit Score: 569; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 8 - 705
Target Start/End: Original strand, 12947951 - 12948642
Alignment:
Q  8 gagcagagaagttgtgtgagttaactcacgctgagattaacactagcgtgacttaagtcacacagaattttgcactgacgtgagttaactcgcgtagggg 107  Q
    ||||| ||||| ||||||||||||||||||||||||| ||||||||         |||||| || ||||||||||| |||||||||||||||||||||||    
T  12947951 gagcacagaagctgtgtgagttaactcacgctgagatcaacactag---------agtcacgcataattttgcactaacgtgagttaactcgcgtagggg 12948041  T
Q  108 taatattgtcatttcaattgggaatgagcaaaaactgttaggtaaagagcataattctttttgggggttatgtttcagaccggcataaagcccaatgtga 207  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12948042 taaaattgtcatttcaattgggaatgagcaaaaactgttaggtaaagagcataattctttttgggg-ttatgtttcagaccggcataaagcccaatgtga 12948140  T
Q  208 atggtccaataaagccaaagcccatattcctcaagagaaagcattgtgatggtgcactcgaaaccctatgtgtatcatcgcacatgagcgcgtcagaatc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12948141 atggtccaataaagccaaagcccatattcctcaagagaaagcattgtgatggtgcactcgaaaccctatgtgtatcaccgcacatgagcgcgtcagaatc 12948240  T
Q  308 aatcctaaccctcataatcatctataacagtctcgaggatttacactgcaaaattatgttgcatgatcaaccttctcgggtatataagcgtgactcgacg 407  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12948241 aatcctagccctcagagtcatctataacagtctcgaggatttacactgcaaaattatgttgcattatcaaccttctcgggtatataagcgtgactcgacg 12948340  T
Q  408 tcgctcaacgtacactttc----acccaattttctctcacaattgagcgtcggagttttaatgtgtctgcaggcaccattttttctgacgacgaggcttg 503  Q
    |||||||||||||||||||    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  12948341 tcgctcaacgtacactttcgttcacccaattttctctcacaattgagcgtcggaattttaatgtgtcagcaggcaccattttttctgacgacgaggcttg 12948440  T
Q  504 ttctcctccacgctggagcaccgtgacaacaacaactgcaatttccgatgaaccaacgctacattcctatgatcttattatgatttaaacaaatgtcata 603  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  12948441 ttctcctccacgctggagcaccgtgacaacaacaactgcgatttccgatgaaccagcgctacattcctctgatcttattatgatttaaacaaatgtcata 12948540  T
Q  604 gtttgttaaatgactcatccaaccatcatatcgtgtcctatttttgaatatgcattgcaaccactaatacacatcacttgtatatatgtggaccactttc 703  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12948541 gtttgttaaatgactcatccaaccatcatatcgtgtcttatttttgaatatgcattgcaaccactaatacatatcacttgtatatatgtggaccactttc 12948640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 14998883 - 14998971
Alignment:
Q  51 tagcgtgacttaagtcacacagaattttgcactgacgtgagttaactcgcgtaggggtaatattgtcatttcaattgggaatgagcaaaa 140  Q
    |||||||| |||||||||||| |||||  |||| |||||||||||||| || | ||||||| ||| ||||||| ||||||||||||||||    
T  14998883 tagcgtgagttaagtcacaca-aatttaacactaacgtgagttaactcacgcatgggtaattttgacatttcagttgggaatgagcaaaa 14998971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 1349220 - 1349299
Alignment:
Q  87 gtgagttaactcgcgtaggggtaatattgtcatttcaattgggaatgagcaaaaactgttaggtaaagagcataattctt 166  Q
    ||||||||||  ||||| ||||| | | ||||||||| | ||||||||||||||||| || ||||||||||| |||||||    
T  1349220 gtgagttaacatgcgtaagggtattttggtcatttcattcgggaatgagcaaaaacttttgggtaaagagcagaattctt 1349299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 15908968 - 15908891
Alignment:
Q  88 tgagttaactcgcgtaggggtaatattgtcatttcaattgggaatgagcaaaaactgttaggtaaagagcataattct 165  Q
    |||||||||||  | | ||||||| ||||| ||||| ||||||| |||||||||| ||||| ||||||||| ||||||    
T  15908968 tgagttaactcatgcatgggtaattttgtcttttcagttgggaacgagcaaaaacagttagataaagagcaaaattct 15908891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 1349125 - 1349056
Alignment:
Q  86 cgtgagttaactcgcgtaggggtaatattgtcatttcaattgggaatgagcaaaaactgttaggtaaaga 155  Q
    ||||||||||||| || ||||  | | | ||||||||| ||||||||||||||||||| || ||||||||    
T  1349125 cgtgagttaactcacgcagggacattttggtcatttcacttgggaatgagcaaaaacttttgggtaaaga 1349056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 15892192 - 15892147
Alignment:
Q  26 agttaactcacgctgagattaacactagcgtgacttaagtcacaca 71  Q
    ||||||||||||| ||||||||||||| ||||| |||| |||||||    
T  15892192 agttaactcacgcagagattaacactaacgtgagttaactcacaca 15892147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 18839000 - 18839045
Alignment:
Q  18 gttgtgtgagttaactcacgctgagattaacactagcgtgacttaa 63  Q
    |||||||||||||| |||||||||| |||||||  |||||||||||    
T  18839000 gttgtgtgagttaagtcacgctgagtttaacacatgcgtgacttaa 18839045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 26218055 - 26218010
Alignment:
Q  23 gtgagttaactcacgctgagattaacactagcgtgacttaagtcac 68  Q
    |||||||||||||||| ||||||||||||||| ||| |||| ||||    
T  26218055 gtgagttaactcacgcagagattaacactagcatgagttaactcac 26218010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 4e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 2031626 - 2031777
Alignment:
Q  14 agaagttgtgtgagttaactcacgctgagattaacactagcgtgacttaagtcacacagaattttgcactgacgtgagttaactcgcgtaggggtaatat 113  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||| || |||||  |||  || ||| |||||||||| |||| ||| ||    
T  2031626 agaagctgcgtgagttaactcacgctgagattaacactagcgtgacttaagtcacgcaaaatttgacaccaacttgaattaactcgcgcagggataaaat 2031725  T
Q  114 tgtcatttcaattgggaatgagcaaaaactgttaggtaaagagcataattct 165  Q
    |||||||||| ||| |||||||||||||||||| | |||||| |||||||||    
T  2031726 tgtcatttcagttgagaatgagcaaaaactgttggataaagaacataattct 2031777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 14469190 - 14469142
Alignment:
Q  118 atttcaattgggaatgagcaaaaactgttaggtaaagagcataattctt 166  Q
    |||||| |||| ||||||||||||||||||||||||||||| |||||||    
T  14469190 atttcagttggaaatgagcaaaaactgttaggtaaagagcagaattctt 14469142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 14485584 - 14485539
Alignment:
Q  23 gtgagttaactcacgctgagattaacactagcgtgacttaagtcac 68  Q
    |||||||||||||| | |||||| ||||||||||||||||| ||||    
T  14485584 gtgagttaactcacacagagatttacactagcgtgacttaactcac 14485539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 8229639 - 8229531
Alignment:
Q  56 tgacttaagtcacacagaattttgcactgacgtgagttaactcgcgtaggggtaatattgtcatttcaattgggaatgagcaaaaactgttaggtaaaga 155  Q
    ||||||||||||| |||||||||| ||| || | ||||||||  |||||| |||| |||||| ||||| ||| ||||||| |||||||||| ||||||||    
T  8229639 tgacttaagtcacgcagaattttgaactaacatcagttaacttacgtaggtgtaaaattgtcttttcagttgagaatgagaaaaaactgttgggtaaaga 8229540  T
Q  156 gcataattc 164  Q
    ||| |||||    
T  8229539 gcagaattc 8229531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 15819786 - 15819709
Alignment:
Q  87 gtgagttaactcgcgtaggggtaatattgtcatttcaattgggaatgagcaaaaactgttaggtaaagagcataattc 164  Q
    |||||||||||| || | ||||| ||||||| ||||||||||||| ||||||||| |||| |||||||| ||||||||    
T  15819786 gtgagttaactcacgcatgggtattattgtcttttcaattgggaacgagcaaaaagtgttgggtaaagaacataattc 15819709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 8229691 - 8229646
Alignment:
Q  23 gtgagttaactcacgctgagattaacactagcgtgacttaagtcac 68  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  8229691 gtgagttaactcacgttgatattaacactagcgtgacttaattcac 8229646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 2847197 - 2847151
Alignment:
Q  118 atttcaattgggaatgagcaaaaactgttaggtaaagagcataattc 164  Q
    |||||| ||||||||||||||||  |||||||||||||||| |||||    
T  2847197 atttcagttgggaatgagcaaaacatgttaggtaaagagcagaattc 2847151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 22199103 - 22199152
Alignment:
Q  23 gtgagttaactcacgctgagattaacactagcgtgacttaagtcacacag 72  Q
    |||||||||||||||| ||||| ||||||| ||||| |||| ||||||||    
T  22199103 gtgagttaactcacgcagagatgaacactaacgtgagttaactcacacag 22199152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 22238718 - 22238669
Alignment:
Q  23 gtgagttaactcacgctgagattaacactagcgtgacttaagtcacacag 72  Q
    |||||||||||||||| ||||| ||||||| ||||| |||| ||||||||    
T  22238718 gtgagttaactcacgcagagatgaacactaacgtgagttaactcacacag 22238669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 12782764 - 12782843
Alignment:
Q  86 cgtgagttaactcgcgtaggggtaatattgtcatttcaattgggaatgagcaaaaactgttaggtaaagagcataattct 165  Q
    ||||||||||||| ||||||||||| | | || ||||| ||||||| ||| ||||||| |||||||||||||| ||||||    
T  12782764 cgtgagttaactcacgtaggggtaaaaatatcttttcagttgggaacgagaaaaaactattaggtaaagagcagaattct 12782843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 48632291 - 48632341
Alignment:
Q  119 tttcaattgggaatgagcaaaaactgttaggtaaagagcataattcttttt 169  Q
    |||||||||| || ||||||||||||||  |||||||||||||||||||||    
T  48632291 tttcaattggaaacgagcaaaaactgttgtgtaaagagcataattcttttt 48632341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 21566867 - 21566914
Alignment:
Q  23 gtgagttaactcacgctgagattaacactagcgtgacttaagtcacac 70  Q
    |||||||||||||||||    |||||||||||||||||||||||||||    
T  21566867 gtgagttaactcacgctagtgttaacactagcgtgacttaagtcacac 21566914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 43148692 - 43148619
Alignment:
Q  24 tgagttaactcacgctgagattaacactagcgtgacttaagtcacacagaattttgcactgacgtgagttaactc 98  Q
    ||||||||||||||| ||||||||||||||| ||| |||||||||||| |||||  ||||  |||||||||||||    
T  43148692 tgagttaactcacgcagagattaacactagcatgagttaagtcacaca-aatttaacactagcgtgagttaactc 43148619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 163
Target Start/End: Original strand, 18862376 - 18862454
Alignment:
Q  85 acgtgagttaactcgcgtaggggtaatattgtcatttcaattgggaatgagcaaaaactgttaggtaaagagcataatt 163  Q
    |||||||||||||| || ||| ||||| |||  |||||| ||||||||||||||||  |||||||| ||||||| ||||    
T  18862376 acgtgagttaactcacgcaggtgtaattttgaaatttcagttgggaatgagcaaaatgtgttaggttaagagcagaatt 18862454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 11673148 - 11673106
Alignment:
Q  190 gcataaagcccaatgtgaatggtccaataaagccaaagcccat 232  Q
    |||||||| | ||||||||||||||||||||||||| ||||||    
T  11673148 gcataaagtctaatgtgaatggtccaataaagccaaggcccat 11673106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 6282441 - 6282494
Alignment:
Q  23 gtgagttaactcacgctgagattaacactagcgtgacttaagtcacacagaatt 76  Q
    |||||||||||||||| ||||||||||||| ||||| ||||||||| |||||||    
T  6282441 gtgagttaactcacgcagagattaacactaacgtgagttaagtcacgcagaatt 6282494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 24582517 - 24582472
Alignment:
Q  23 gtgagttaactcacgctgagattaacactagcgtgacttaagtcac 68  Q
    ||||||||||||||||||  ||||||||| |||||| |||||||||    
T  24582517 gtgagttaactcacgctggaattaacacttgcgtgagttaagtcac 24582472  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 269187 - 269110
Alignment:
Q  86 cgtgagttaactcgcgtaggggtaatattgtcatttcaattgggaatgagcaaaaactgttaggtaaagagcataatt 163  Q
    |||||||||| || || ||||| | | | ||||||||| ||||||||||||||||||| || ||||||||||| ||||    
T  269187 cgtgagttaagtcacgcaggggcattttggtcatttcacttgggaatgagcaaaaacttttgggtaaagagcagaatt 269110  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 25359014 - 25358934
Alignment:
Q  86 cgtgagttaactcgcgtaggggtaatattgtcatttcaattgggaatgagcaaaaactgttaggtaaagagcataattctt 166  Q
    ||||||||||||| || | |||||| | |||| | ||| ||||||| ||| |||||||||| | |||||||||||||||||    
T  25359014 cgtgagttaactcacgcatgggtaaaaatgtcttctcagttgggaacgaggaaaaactgttggataaagagcataattctt 25358934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 18673609 - 18673675
Alignment:
Q  87 gtgagttaactcgcgtaggggtaatattgtcatttcaattgggaatgagcaaaaactgttaggtaaa 153  Q
    |||||||||||| || ||||||| | ||||| ||| | ||||||||||||||||||| || ||||||    
T  18673609 gtgagttaactcacgcaggggtatttttgtctttttatttgggaatgagcaaaaacttttgggtaaa 18673675  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 22858516 - 22858593
Alignment:
Q  88 tgagttaactcgcgtaggggtaatattgtcatttcaattgggaatgagcaaaaactgttaggtaaagagcataattct 165  Q
    ||||||||||| || | | ||||| |||  |||||| |||||||||| |||||  |||| ||||||||||||||||||    
T  22858516 tgagttaactcacgcatgtgtaattttgggatttcagttgggaatgaacaaaacgtgttgggtaaagagcataattct 22858593  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 48957617 - 48957680
Alignment:
Q  101 gtaggggtaatattgtcatttcaattgggaatgagcaaaaactgttaggtaaagagcataattc 164  Q
    |||||||||| |||||| ||||||||| ||||||||||   ||||| |||| ||||||||||||    
T  48957617 gtaggggtaaaattgtcttttcaattgcgaatgagcaatttctgttgggtatagagcataattc 48957680  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 22529153 - 22529100
Alignment:
Q  113 ttgtcatttcaattgggaatgagcaaaaa-ctgttaggtaaagagcataattct 165  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||||| ||||||    
T  22529153 ttgtcttttcaattgggaacgagcaaaaaactgttgggtaaagagcaaaattct 22529100  T

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