View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12765_low_10 (Length: 461)

Name: NF12765_low_10
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12765_low_10
NF12765_low_10
[»] chr3 (8 HSPs)
chr3 (18-451)||(36236268-36236700)
chr3 (307-437)||(11047444-11047574)
chr3 (307-381)||(30135501-30135576)
chr3 (307-381)||(30141630-30141705)
chr3 (307-381)||(30145052-30145127)
chr3 (307-381)||(30130781-30130856)
chr3 (307-381)||(50196901-50196976)
chr3 (307-355)||(30134105-30134153)
[»] chr8 (3 HSPs)
chr8 (309-380)||(30525435-30525507)
chr8 (304-347)||(42160477-42160520)
chr8 (307-375)||(30525228-30525297)
[»] chr6 (1 HSPs)
chr6 (307-381)||(10742252-10742327)
[»] chr4 (5 HSPs)
chr4 (310-432)||(36165455-36165577)
chr4 (309-381)||(36165883-36165956)
chr4 (307-355)||(23564548-23564596)
chr4 (310-376)||(44019602-44019669)
chr4 (329-432)||(18523225-18523328)
[»] chr7 (2 HSPs)
chr7 (307-381)||(8745861-8745936)
chr7 (307-347)||(35035414-35035454)
[»] chr1 (3 HSPs)
chr1 (307-381)||(10645793-10645868)
chr1 (310-354)||(10514950-10514994)
chr1 (326-381)||(35536789-35536845)
[»] chr5 (1 HSPs)
chr5 (318-375)||(8402133-8402191)
[»] scaffold1432 (1 HSPs)
scaffold1432 (326-381)||(952-1008)


Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Original strand, 36236268 - 36236700
Alignment:
Q  18 tttagatatggtgttttaagggctttgattatgagttttaatctgaggttgatcttgaacgacgaagagagttaatggaagcgcattggagaacgacgac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  36236268 tttagatatggtgttttaagggctttgattatgagttttaatctgaggttgatcttgaatgacgaagagagttaatggaagcgcattggagaacgacgat 36236367  T
Q  118 aaatcttttatagttgggaattacctggaaacactcaaacgcttaaaacaataattggttaatgttagtgattcaagttttataatagaatgtgtatctt 217  Q
      ||| ||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36236368 ggatcctttatagttggaaattacttgcaaacactcaaacgcttaaaacaataattggttaatgttagtgattcaagttttataatagaatgtgtatctt 36236467  T
Q  218 tcatctgatgcttgttttatagtaagggttttatgagagaagagtcaaaaacttgttgagatcgtcgaaagatttgcgtcgatggatattgttaaatggg 317  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  36236468 tcatctgatgcttgttttatagtaagggttttataagagaagagtcaaaaacttgttgaggtcgtcgaaagatttgcgtcgatggatattgtgaaatggg 36236567  T
Q  318 tttggatgtcatcccaaaagatagctcaaatgatgaggtgctcaaacatatttatacattcaacgagcccataaaccatagcaatgttggactggaaaca 417  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||||||    
T  36236568 tttggatgtcatcccaaaagataactcaaatgatgaggtgctcaaacatatttatacattcaac-agtccaaaaatcatagcaatgttggactggaaaca 36236666  T
Q  418 aactacagacaactttaacagatatcaccctatg 451  Q
    ||||||||||||||||||||||||||||||||||    
T  36236667 aactacagacaactttaacagatatcaccctatg 36236700  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 437
Target Start/End: Complemental strand, 11047574 - 11047444
Alignment:
Q  307 tgttaaatgggtttggatgtcatcccaaaagatagctcaaatgatga-ggtgctcaaacatatttatacattcaacgagcccataaaccatagcaatgtt 405  Q
    |||||||||||||||||| |||||  ||||| ||||||||| ||||| ||| ||||| | |||||||||| ||||| ||| || |||||  ||||||||     
T  11047574 tgttaaatgggtttggatctcatcataaaagttagctcaaaggatgagggtactcaagcgtatttatacactcaac-agcgcacaaacctgagcaatgtg 11047476  T
Q  406 ggactggaaacaaactacagacaactttaaca 437  Q
    ||||| ||||||||||||| ||||||| ||||    
T  11047475 ggactagaaacaaactacaaacaacttcaaca 11047444  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 381
Target Start/End: Original strand, 30135501 - 30135576
Alignment:
Q  307 tgttaaatgggtttggatgtcatcccaaaagatagctcaaatgatga-ggtgctcaaacatatttatacattcaac 381  Q
    |||||||| || |||||| |||||||||||| ||||||||||||||| ||| ||||| ||||||||||||| ||||    
T  30135501 tgttaaataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttatacatccaac 30135576  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 381
Target Start/End: Original strand, 30141630 - 30141705
Alignment:
Q  307 tgttaaatgggtttggatgtcatcccaaaagatagctcaaatgatga-ggtgctcaaacatatttatacattcaac 381  Q
    |||||||| || |||||| |||||||||||| ||||||||||||||| ||| ||||| ||||||||||||| ||||    
T  30141630 tgttaaataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttatacatccaac 30141705  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 381
Target Start/End: Original strand, 30145052 - 30145127
Alignment:
Q  307 tgttaaatgggtttggatgtcatcccaaaagatagctcaaatgatga-ggtgctcaaacatatttatacattcaac 381  Q
    |||||||| || |||||| |||||||||||| ||||||||||||||| ||| ||||| ||||||||||||| ||||    
T  30145052 tgttaaataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttatacatccaac 30145127  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 381
Target Start/End: Original strand, 30130781 - 30130856
Alignment:
Q  307 tgttaaatgggtttggatgtcatcccaaaagatagctcaaatgatg-aggtgctcaaacatatttatacattcaac 381  Q
    |||||||| ||||||||| |||||||||||  |||||||||||||| || | ||||| |||||||||||| |||||    
T  30130781 tgttaaataggtttggatctcatcccaaaaactagctcaaatgatgaagatactcaagcatatttatacactcaac 30130856  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 50196976 - 50196901
Alignment:
Q  307 tgttaaatgggtttggatgtcatcccaaaagatagctcaaatgatga-ggtgctcaaacatatttatacattcaac 381  Q
    |||||||| ||||||||| |||||||||||| ||||||||| ||||| |||  | ||||||||||||||| |||||    
T  50196976 tgttaaataggtttggatctcatcccaaaagttagctcaaaggatgagggtatttaaacatatttatacactcaac 50196901  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 30134105 - 30134153
Alignment:
Q  307 tgttaaatgggtttggatgtcatcccaaaagatagctcaaatgatgagg 355  Q
    |||||||| || |||||| |||||||||||| |||||||||||||||||    
T  30134105 tgttaaataggcttggatctcatcccaaaagttagctcaaatgatgagg 30134153  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 30525507 - 30525435
Alignment:
Q  309 ttaaatgggtttggatgtcatcccaaaagatagctcaaatgatg-aggtgctcaaacatatttatacattcaa 380  Q
    |||||||||||||||| |||||| ||||| ||||||||| |||| |||| |||||||||||||||||| ||||    
T  30525507 ttaaatgggtttggatctcatccaaaaaggtagctcaaaagatgaaggtactcaaacatatttatacactcaa 30525435  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 347
Target Start/End: Complemental strand, 42160520 - 42160477
Alignment:
Q  304 tattgttaaatgggtttggatgtcatcccaaaagatagctcaaa 347  Q
    |||||||||||| |||||||| |||||||||||| |||||||||    
T  42160520 tattgttaaatgagtttggatctcatcccaaaagttagctcaaa 42160477  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 30525297 - 30525228
Alignment:
Q  307 tgttaaatgggtttggatgtcatcccaaaagatagctcaaatgatgag-gtgctcaaacatatttataca 375  Q
    ||||||||| | ||| || |||||||||||| |||||||||  ||||| || ||||||||||||||||||    
T  30525297 tgttaaatgtgcttgtatctcatcccaaaagctagctcaaagaatgagagtactcaaacatatttataca 30525228  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 10742327 - 10742252
Alignment:
Q  307 tgttaaatgggtttggatgtcatcccaaaagatagctcaaatgatga-ggtgctcaaacatatttatacattcaac 381  Q
    ||||||||| |||||||| |||||||||||| ||  ||||||||| | ||| | ||||||||||||||||||||||    
T  10742327 tgttaaatgtgtttggatctcatcccaaaagctaaatcaaatgattagggtacccaaacatatttatacattcaac 10742252  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 432
Target Start/End: Original strand, 36165455 - 36165577
Alignment:
Q  310 taaatgggtttggatgtcatcccaaaagatagctcaaatgatga-ggtgctcaaacatatttatacattcaacgagcccataaaccatagcaatgttgga 408  Q
    |||||||| |||||| |||||||||||  |||| |||| ||||| ||| ||||||||| |||||||| ||||| | |||   |||| ||||||||| |||    
T  36165455 taaatgggcttggatctcatcccaaaatctagcacaaaagatgagggtactcaaacatctttatacactcaac-aacccgggaaccttagcaatgtggga 36165553  T
Q  409 ctggaaacaaactacagacaactt 432  Q
    || |||||||| |||| |||||||    
T  36165554 ctagaaacaaattacaaacaactt 36165577  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 36165883 - 36165956
Alignment:
Q  309 ttaaatgggtttggatgtcatcccaaaagatagctcaaatgatgagg-tgctcaaacatatttatacattcaac 381  Q
    ||||||| |||||||| ||||| |||||| ||||| ||| ||||||| ||||||||||| |||||||| |||||    
T  36165883 ttaaatgagtttggatctcatcgcaaaagttagcttaaaggatgagggtgctcaaacatgtttatacactcaac 36165956  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 23564548 - 23564596
Alignment:
Q  307 tgttaaatgggtttggatgtcatcccaaaagatagctcaaatgatgagg 355  Q
    |||||||| ||||||||| |||||||||||| ||||||||| |||||||    
T  23564548 tgttaaataggtttggatctcatcccaaaagttagctcaaaggatgagg 23564596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 44019602 - 44019669
Alignment:
Q  310 taaatgggtttggatgtcatcccaaaagatagctcaaatgatga-ggtgctcaaacatatttatacat 376  Q
    |||||||| || ||| |||||||||||| ||||||||| ||||| ||||| |||||| ||||||||||    
T  44019602 taaatgggcttagatctcatcccaaaagttagctcaaaggatgagggtgcccaaacacatttatacat 44019669  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 432
Target Start/End: Original strand, 18523225 - 18523328
Alignment:
Q  329 tcccaaaagatagctcaaatgatga-ggtgctcaaacatatttatacattcaacgagcccataaaccatagcaatgttggactggaaacaaactacagac 427  Q
    |||||||||||| |||||| ||||| ||| ||||||||||||||||  |||||| | |||  |||||  |||||||| ||  | ||||||||||||| ||    
T  18523225 tcccaaaagatacctcaaaggatgagggtactcaaacatatttatatgttcaac-aacccggaaacctgagcaatgtggggttagaaacaaactacaaac 18523323  T
Q  428 aactt 432  Q
    |||||    
T  18523324 aactt 18523328  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 381
Target Start/End: Original strand, 8745861 - 8745936
Alignment:
Q  307 tgttaaatgggtttggatgtcatcccaaaagatagctcaaatgatgagg-tgctcaaacatatttatacattcaac 381  Q
    ||||||||| | |||||| |||||||||||| ||||| ||| ||||||| | ||| |||||||||||||| |||||    
T  8745861 tgttaaatgagcttggatctcatcccaaaagttagcttaaaggatgaggatactcgaacatatttatacactcaac 8745936  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 35035414 - 35035454
Alignment:
Q  307 tgttaaatgggtttggatgtcatcccaaaagatagctcaaa 347  Q
    |||| ||||||||||||| |||||||||||| |||||||||    
T  35035414 tgttcaatgggtttggatctcatcccaaaagctagctcaaa 35035454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 10645868 - 10645793
Alignment:
Q  307 tgttaaatgggtttggatgtcatcccaaaagatagctcaaatgatga-ggtgctcaaacatatttatacattcaac 381  Q
    |||||||| ||||| ||| |||||  |||||||||||| || ||||| ||| |||||||||||||||||| |||||    
T  10645868 tgttaaataggttttgatctcatcttaaaagatagctctaaggatgagggtactcaaacatatttatacactcaac 10645793  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 10514994 - 10514950
Alignment:
Q  310 taaatgggtttggatgtcatcccaaaagatagctcaaatgatgag 354  Q
    ||||||||||||||| |||||||||||| || |||||| ||||||    
T  10514994 taaatgggtttggatctcatcccaaaagctacctcaaaggatgag 10514950  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 381
Target Start/End: Original strand, 35536789 - 35536845
Alignment:
Q  326 tcatcccaaaagatagctcaaatgatgagg-tgctcaaacatatttatacattcaac 381  Q
    |||||||||||| || |||||||||||||| | ||  ||||||||||||||||||||    
T  35536789 tcatcccaaaagttaactcaaatgatgaggatacttgaacatatttatacattcaac 35536845  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 375
Target Start/End: Original strand, 8402133 - 8402191
Alignment:
Q  318 tttggatgtcatcccaaaagatagctcaaatgatga-ggtgctcaaacatatttataca 375  Q
    ||||||| |||||||||||| ||||||||| || || ||| ||||||||||||||||||    
T  8402133 tttggatttcatcccaaaagttagctcaaaggaggagggtactcaaacatatttataca 8402191  T

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Target: scaffold1432 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 381
Target Start/End: Original strand, 952 - 1008
Alignment:
Q  326 tcatcccaaaagatagctcaaatgatgagg-tgctcaaacatatttatacattcaac 381  Q
    |||||||||||| |  |||||| ||||||| | ||||||||||||||||||||||||    
T  952 tcatcccaaaagctcactcaaaggatgaggatactcaaacatatttatacattcaac 1008  T

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