View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12765_low_11 (Length: 454)
Name: NF12765_low_11
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12765_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Original strand, 27976587 - 27977013
Alignment:
| Q |
19 |
gaaagtccatacacaacaaccacagaatacaaatatacaccacatgaagcactttttagaaaatcaggtcaaggatccaacatgcaggatactgatactt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27976587 |
gaaagtccatacacaacaaccacagaatacaaatatacaccacatgaagcactttttagaaaatcaggtcaaggatccaacatgcaggatactgatactt |
27976686 |
T |
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| Q |
119 |
catctctaaacatcgacaacaattctatcagaacatctttcgcagaccaacatgaaaactcatcagcccatggccttagaacccttgagaagctcatggc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27976687 |
catctctaaacatcgacaacaattctatcagaacatctttcgcagaccaacatgaaaactcatcagcccatggccttagaacccttgagaagctcatggc |
27976786 |
T |
|
| Q |
219 |
tgaccaagataagcggcaaaacctttcgaatttagaaaagaaattccgttcagaccttgacgacctcctcgaggaaaatctcgagttttggctgagattt |
318 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27976787 |
tgaccaagataagcggcaaaacctttcggatttagaaaagaaattccgttcagaccttgacgacctcctcgaggaaaatctcgagttttggctaagattt |
27976886 |
T |
|
| Q |
319 |
agcacatcagttcatcagattcaaaagtttcaaaactcaatacaggacttaaaagtagaactaaggacaataaaggaaaacaacaaatccgaaggacatt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27976887 |
agcacatcagttcatcagattcaaaagtttcaaaactcaatacaagacttaaaagtagaactaaggacaataaaggaaaacaacaaatccgaaggacatt |
27976986 |
T |
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| Q |
419 |
cacattctaaacatcaacaacctatgc |
445 |
Q |
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| T |
27976987 |
cacattctaaacatcaacaacctatgc |
27977013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 28306647 - 28306709
Alignment:
| Q |
325 |
tcagttcatcagattcaaaagtttcaaaactcaatacaggacttaaaagtagaactaaggaca |
387 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
28306647 |
tcagttaatcagattcaaaagtttcaaaactcaatttaggacttaaattcagaactaaggaca |
28306709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 393
Target Start/End: Complemental strand, 46039911 - 46039829
Alignment:
| Q |
311 |
tgagatttagcacatcagttcatcagattcaaaagtttcaaaactcaatacaggacttaaaagtagaactaaggacaataaag |
393 |
Q |
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|||| |||||||| ||||||||||| ||||||||||| ||| | || ||||||||||||||||||||||||| | ||||||| |
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| T |
46039911 |
tgaggtttagcacttcagttcatcaaattcaaaagttccaacaatctttacaggacttaaaagtagaactaagaaaaataaag |
46039829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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