View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12765_low_14 (Length: 387)
Name: NF12765_low_14
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12765_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 35037225 - 35037438
Alignment:
| Q |
1 |
tattaattatgatctcattattttcaaatagtctaatatatttagtgattaaatattcgttgttgtaatagactatttaataatcttgtaaacnnnnnnn |
100 |
Q |
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| T |
35037225 |
tattaattatgatctcattattttcaaatagtctaatatatttagcgattaaatattcgttgttgtaatagactattgaataatcgtgtaaacaaaaaaa |
35037324 |
T |
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| Q |
101 |
nnngactatttaatgatcgtatatatacaaatctataatagaaat-----ggatgaagaattgagtaatacattggttttatattagattggttttagat |
195 |
Q |
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| T |
35037325 |
aaagactatttaatgatcgtatatatacaaatctataatagaaattaaatggatgaagaattgagtaatacattggttttatattagattggttttagat |
35037424 |
T |
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| Q |
196 |
tgtgcatgcatgtt |
209 |
Q |
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| T |
35037425 |
tgtgcatgcatgtt |
35037438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 205 - 312
Target Start/End: Original strand, 35037469 - 35037576
Alignment:
| Q |
205 |
atgttgcttttgtttcaggctcactgtagatgattaaattgaggtaggtgaaacaatagattctgaatcttatccacagcatccaggtgaaccagattgt |
304 |
Q |
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| T |
35037469 |
atgttgcttttgtttcaggctcattgtagatgattaaattgaggtaggtgaaacaatagattctgaatcttatccacagcatccaggtgaaccagattgt |
35037568 |
T |
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| Q |
305 |
tcatatta |
312 |
Q |
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| T |
35037569 |
tcatatta |
35037576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 35037638 - 35037714
Alignment:
| Q |
311 |
tagtaacgtacaatgtatttctacatattttgttcttattagttatgttgatccttaatacataatttattcctcta |
387 |
Q |
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| T |
35037638 |
tagtaacgtacaatgtatttttacatattttgttcttattagttatgttgatacttaatacataatttattcctcta |
35037714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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