View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12765_low_19 (Length: 314)
Name: NF12765_low_19
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12765_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 46927068 - 46927342
Alignment:
| Q |
18 |
gaacgaagctagagaagttgttgtgtttgaagtagttagggaggaggtctctagcaaattcaggaggacgccaaacaacgaaggtggagtcatcttcacc |
117 |
Q |
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| T |
46927068 |
gaacgaagctagagaagttgttgtgtttgaagtagttagggaggaggtctctagcaaattcaggaggacgccaaacaacgaaggtggagtcatcttcacc |
46927167 |
T |
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| Q |
118 |
ccaagaaacgatgtgatctgtggctggatcatcaacaagttggtatgttttggtgaggaatggagctgggactgatttgtgtgagtctaaggagagtaaa |
217 |
Q |
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| T |
46927168 |
ccaagaaacgatgtgatctgtggctggatcatcaacaagttggtatgttttggtgaggaatggagctgggactgatttgtgtgagtctaatgagagtaaa |
46927267 |
T |
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| Q |
218 |
atgccttcacagttgtctagtagaagagccattttcagtgatgatcattcaataacacaaacaatactggttttt |
292 |
Q |
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| T |
46927268 |
atgccttcacagttgtctagtagaagagccattttcagtgatgatcattcaataacacaaacaatactggttttt |
46927342 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 195
Target Start/End: Original strand, 38752089 - 38752261
Alignment:
| Q |
23 |
aagctagagaagttgttgtgtttgaagtagttagggaggaggtctctagcaaattcaggaggacgccaaacaacgaaggtggagtcatcttcaccccaag |
122 |
Q |
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| T |
38752089 |
aagcttgagaagttgttatgcttgaaaaaattgggaagaagatctctagcaaactcaggaggcctccaaacaacaaatgtagtttcatcatcactccaag |
38752188 |
T |
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| Q |
123 |
aaacgatgtgatctgtggctggatcatcaacaagttggtatgttttggtgaggaatggagctgggactgattt |
195 |
Q |
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| T |
38752189 |
atacaatgtggtcagtgagaggatcatcaacaagttggtatgtctttgtcaagaaaggagcaggcactgattt |
38752261 |
T |
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