View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12765_low_27 (Length: 219)
Name: NF12765_low_27
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12765_low_27 |
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| [»] chr3 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 37193589 - 37193780
Alignment:
| Q |
1 |
aaagtaggaaaagtattttgtcaacatttcacaaaagagagaggggagcgtattaatcatatcattggtgaacttgtcgtgtgggtagtattgttttagt |
100 |
Q |
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| T |
37193589 |
aaagtaggaaaagtattttgtcaacatttcacaaaagagagaggggagcgtattaatcatatcattggagaacttgtcgtgtggggagtattgttttagt |
37193688 |
T |
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| Q |
101 |
cccaacaggaaacatcgagggagttgcttcaaacgtattcaacaggtcggtcaaattacatcatttatttgctaggttctatttaaagttac |
192 |
Q |
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| T |
37193689 |
cccaacaggaaacatcgagggagttgcttccaacgtattcaacaggtcggtcaaatcacatcatttatttgctgggttctatttaaagttac |
37193780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 219
Target Start/End: Complemental strand, 9780280 - 9780249
Alignment:
| Q |
188 |
gttactctctccgtccctaattataagaccct |
219 |
Q |
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| T |
9780280 |
gttactctctccgtccctaattataagaccct |
9780249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 4024047 - 4024081
Alignment:
| Q |
185 |
aaagttactctctccgtccctaattataagaccct |
219 |
Q |
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| T |
4024047 |
aaagttactccctccgtccctaattataagaccct |
4024081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 52058982 - 52059014
Alignment:
| Q |
187 |
agttactctctccgtccctaattataagaccct |
219 |
Q |
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| T |
52058982 |
agttactccctccgtccctaattataagaccct |
52059014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 8716934 - 8716900
Alignment:
| Q |
185 |
aaagttactctctccgtccctaattataagaccct |
219 |
Q |
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| T |
8716934 |
aaagttactccctccgtccctaattataagaccct |
8716900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 51136 - 51103
Alignment:
| Q |
186 |
aagttactctctccgtccctaattataagaccct |
219 |
Q |
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| T |
51136 |
aagttactccctccgtccctaattataagaccct |
51103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 219
Target Start/End: Complemental strand, 28965764 - 28965735
Alignment:
| Q |
190 |
tactctctccgtccctaattataagaccct |
219 |
Q |
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| T |
28965764 |
tactctctccgtccctaattataagaccct |
28965735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 188 - 217
Target Start/End: Complemental strand, 12106103 - 12106074
Alignment:
| Q |
188 |
gttactctctccgtccctaattataagacc |
217 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
12106103 |
gttactctctccgtccctaattataagacc |
12106074 |
T |
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