View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12765_low_28 (Length: 203)
Name: NF12765_low_28
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12765_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 41232026 - 41232200
Alignment:
| Q |
17 |
aaatgaaagtatgcaactacttccaaagggaaaaaagtgtgcataaactaactcctacctaatattgtgttagcattggaatcatgtggctataa----- |
111 |
Q |
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| T |
41232026 |
aaatgaaagtatgcaactacttccaaagggaaaaaagtgtgcataaactaactcctacctaatattgtgttagcattggaatcatgtggctatactatat |
41232125 |
T |
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| Q |
112 |
ataggaagaaaagcattttattcatcttgcacacagaaagaacataagttgtcaataattaatatccttagtatt |
186 |
Q |
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| T |
41232126 |
ataggaagcaaagcattttattcatcttccacacagaaaaaacataagttgtccataattaatgtccttagtatt |
41232200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 41212066 - 41212127
Alignment:
| Q |
48 |
aaaaagtgtgcataaactaactcctacctaatattgtgttagcattggaatcatgtggctat |
109 |
Q |
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| T |
41212066 |
aaaaagtgtgcataaactaccttctacctaacaatgtgttagcattggaatcatgtggctat |
41212127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 33071753 - 33071694
Alignment:
| Q |
46 |
gaaaaaagtgtgcataaactaactcctacctaatattgtgttagcattggaatcatgtgg |
105 |
Q |
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| T |
33071753 |
gaaaaaagtgtgaagaaacaaactcttacctaataatgtggtagcattggattcatgtgg |
33071694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 41531205 - 41531248
Alignment:
| Q |
23 |
aagtatgcaactacttccaaagggaaaaaagtgtgcataaacta |
66 |
Q |
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| T |
41531205 |
aagtatgcaactacttccaaagggaaaaacgtgtgtagaaacta |
41531248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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