View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12765_low_3 (Length: 530)

Name: NF12765_low_3
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12765_low_3
NF12765_low_3
[»] chr1 (31 HSPs)
chr1 (255-514)||(39776729-39776981)
chr1 (44-196)||(39776560-39776712)
chr1 (1-46)||(23536065-23536110)
chr1 (1-48)||(8224764-8224811)
chr1 (1-44)||(15034775-15034818)
chr1 (1-44)||(24273250-24273293)
chr1 (1-48)||(27935601-27935648)
chr1 (1-44)||(30190252-30190295)
chr1 (1-48)||(43623008-43623055)
chr1 (1-46)||(4038073-4038118)
chr1 (1-46)||(15034657-15034702)
chr1 (9-50)||(15245454-15245495)
chr1 (1-46)||(26501109-26501154)
chr1 (1-38)||(34756433-34756470)
chr1 (469-513)||(1290072-1290116)
chr1 (4-47)||(5474414-5474457)
chr1 (469-516)||(27072528-27072575)
chr1 (9-48)||(34007441-34007480)
chr1 (1-44)||(47165242-47165285)
chr1 (4-38)||(27804271-27804305)
chr1 (1-47)||(49659214-49659259)
chr1 (469-514)||(2544789-2544834)
chr1 (1-46)||(27804381-27804426)
chr1 (1-38)||(45565400-45565437)
chr1 (469-513)||(6084172-6084216)
chr1 (469-513)||(28090735-28090779)
chr1 (469-509)||(28511842-28511882)
chr1 (1-45)||(32287963-32288007)
chr1 (9-49)||(32572935-32572975)
chr1 (469-513)||(39318326-39318370)
chr1 (469-513)||(50846759-50846803)
[»] chr7 (31 HSPs)
chr7 (64-196)||(44207967-44208099)
chr7 (1-52)||(31632714-31632765)
chr7 (1-48)||(40110854-40110901)
chr7 (4-50)||(40854089-40854135)
chr7 (1-47)||(43955514-43955560)
chr7 (1-38)||(21636001-21636038)
chr7 (1-46)||(40110735-40110780)
chr7 (1-44)||(26162153-26162196)
chr7 (1-44)||(34398965-34399008)
chr7 (1-47)||(2057392-2057438)
chr7 (1-47)||(14603278-14603324)
chr7 (1-47)||(35776971-35777017)
chr7 (469-514)||(26741935-26741980)
chr7 (1-46)||(39342658-39342703)
chr7 (1-38)||(43955630-43955667)
chr7 (1-44)||(6498781-6498824)
chr7 (1-44)||(28539184-28539227)
chr7 (1-44)||(35455804-35455847)
chr7 (1-47)||(5644674-5644720)
chr7 (469-511)||(8492277-8492319)
chr7 (469-511)||(8519087-8519129)
chr7 (1-47)||(34388262-34388308)
chr7 (469-511)||(45903913-45903955)
chr7 (1-46)||(29065817-29065862)
chr7 (1-46)||(29639231-29639276)
chr7 (1-38)||(30629063-30629100)
chr7 (9-46)||(31913234-31913271)
chr7 (469-514)||(34341436-34341481)
chr7 (469-514)||(34926563-34926608)
chr7 (469-513)||(3457558-3457602)
chr7 (469-513)||(40979969-40980013)
[»] chr4 (23 HSPs)
chr4 (1-49)||(7352928-7352976)
chr4 (1-54)||(1112595-1112648)
chr4 (1-44)||(857355-857398)
chr4 (1-44)||(28845987-28846030)
chr4 (1-44)||(31473849-31473892)
chr4 (1-44)||(49111428-49111471)
chr4 (1-47)||(4896748-4896794)
chr4 (1-38)||(7352818-7352855)
chr4 (1-38)||(10633038-10633075)
chr4 (469-514)||(12443291-12443336)
chr4 (1-45)||(31742880-31742924)
chr4 (1-44)||(14982280-14982323)
chr4 (1-44)||(15660299-15660342)
chr4 (1-44)||(16516171-16516214)
chr4 (1-44)||(36455907-36455950)
chr4 (4-47)||(36456045-36456088)
chr4 (474-513)||(53540487-53540526)
chr4 (1-43)||(4441338-4441380)
chr4 (469-514)||(13805306-13805351)
chr4 (1-38)||(28845877-28845914)
chr4 (1-46)||(41498606-41498651)
chr4 (1-38)||(42542983-42543020)
chr4 (1-38)||(42844659-42844696)
[»] chr8 (31 HSPs)
chr8 (1-47)||(17110866-17110912)
chr8 (1-44)||(3853616-3853659)
chr8 (1-44)||(3858074-3858117)
chr8 (1-44)||(17110985-17111028)
chr8 (1-48)||(36103097-36103144)
chr8 (9-50)||(14799973-14800014)
chr8 (1-46)||(14991690-14991735)
chr8 (1-46)||(27322689-27322734)
chr8 (1-38)||(30435252-30435289)
chr8 (1-46)||(42711396-42711441)
chr8 (9-49)||(33377345-33377385)
chr8 (1-48)||(14235-14281)
chr8 (1-44)||(24044960-24045003)
chr8 (1-44)||(28324702-28324745)
chr8 (1-44)||(29257391-29257434)
chr8 (9-44)||(30435350-30435385)
chr8 (1-44)||(33902667-33902710)
chr8 (1-48)||(40046800-40046847)
chr8 (1-47)||(32626074-32626120)
chr8 (1-38)||(3853732-3853769)
chr8 (1-38)||(3858190-3858227)
chr8 (1-38)||(8689138-8689175)
chr8 (1-38)||(13404833-13404870)
chr8 (1-46)||(23011732-23011777)
chr8 (469-514)||(32931156-32931201)
chr8 (1-38)||(44346718-44346755)
chr8 (469-513)||(490532-490576)
chr8 (469-513)||(29520846-29520890)
chr8 (469-513)||(35914642-35914686)
chr8 (13-53)||(42711295-42711335)
chr8 (469-513)||(43904706-43904750)
[»] chr5 (38 HSPs)
chr5 (1-54)||(25935317-25935370)
chr5 (1-49)||(40643933-40643981)
chr5 (1-48)||(5658772-5658819)
chr5 (1-47)||(927299-927345)
chr5 (1-46)||(15374076-15374121)
chr5 (1-38)||(15804410-15804447)
chr5 (1-54)||(32470872-32470925)
chr5 (1-49)||(41762242-41762290)
chr5 (1-44)||(22303897-22303940)
chr5 (1-48)||(40809337-40809384)
chr5 (1-52)||(40809457-40809508)
chr5 (4-46)||(2316376-2316418)
chr5 (1-47)||(40090441-40090487)
chr5 (1-38)||(2721587-2721624)
chr5 (469-514)||(9235243-9235288)
chr5 (1-38)||(9894349-9894386)
chr5 (1-38)||(28828373-28828410)
chr5 (469-513)||(5558338-5558382)
chr5 (1-37)||(37145528-37145564)
chr5 (9-48)||(2550324-2550363)
chr5 (1-44)||(9764454-9764497)
chr5 (1-44)||(15804322-15804365)
chr5 (1-44)||(22766952-22766995)
chr5 (1-44)||(26281296-26281339)
chr5 (1-48)||(33245399-33245446)
chr5 (1-44)||(37722921-37722964)
chr5 (1-43)||(3563278-3563320)
chr5 (1-47)||(9764335-9764381)
chr5 (1-43)||(20523249-20523291)
chr5 (9-47)||(22305109-22305147)
chr5 (6-48)||(34982212-34982254)
chr5 (1-38)||(19533934-19533971)
chr5 (1-46)||(23092078-23092123)
chr5 (1-38)||(28828463-28828500)
chr5 (1-46)||(32250125-32250169)
chr5 (469-513)||(6859578-6859622)
chr5 (469-513)||(18855804-18855848)
chr5 (4-44)||(20523133-20523173)
[»] chr3 (29 HSPs)
chr3 (1-54)||(49457333-49457386)
chr3 (1-48)||(42005982-42006029)
chr3 (1-48)||(44436254-44436301)
chr3 (1-50)||(35279931-35279980)
chr3 (1-62)||(44692938-44692999)
chr3 (1-48)||(27252010-27252057)
chr3 (1-44)||(46672832-46672875)
chr3 (1-44)||(47767432-47767475)
chr3 (1-47)||(34088568-34088614)
chr3 (1-46)||(9129460-9129505)
chr3 (1-46)||(9137567-9137612)
chr3 (469-513)||(40106661-40106705)
chr3 (469-513)||(54128576-54128620)
chr3 (1-44)||(2732639-2732682)
chr3 (9-44)||(25655315-25655350)
chr3 (1-44)||(36398018-36398061)
chr3 (1-44)||(37054394-37054437)
chr3 (1-44)||(44692822-44692865)
chr3 (469-512)||(45486890-45486933)
chr3 (9-47)||(25655403-25655441)
chr3 (1-47)||(53129872-53129918)
chr3 (1-46)||(7302344-7302389)
chr3 (1-38)||(21307561-21307598)
chr3 (468-513)||(45289131-45289176)
chr3 (469-514)||(49841812-49841857)
chr3 (1-45)||(5415782-5415826)
chr3 (469-513)||(38060911-38060955)
chr3 (474-514)||(40116384-40116424)
chr3 (469-513)||(48508432-48508476)
[»] chr6 (17 HSPs)
chr6 (1-49)||(8574781-8574829)
chr6 (1-48)||(6919823-6919870)
chr6 (1-44)||(8574695-8574738)
chr6 (1-44)||(9285647-9285690)
chr6 (1-47)||(776196-776242)
chr6 (9-47)||(8475176-8475214)
chr6 (1-47)||(28918162-28918208)
chr6 (1-38)||(9763018-9763055)
chr6 (4-44)||(33733432-33733472)
chr6 (1-53)||(34245010-34245062)
chr6 (1-44)||(776080-776123)
chr6 (469-514)||(34546-34591)
chr6 (11-52)||(1195343-1195384)
chr6 (1-38)||(15299541-15299577)
chr6 (469-513)||(5096031-5096075)
chr6 (469-513)||(12890772-12890816)
chr6 (469-513)||(30031453-30031497)
[»] chr2 (31 HSPs)
chr2 (1-47)||(10480116-10480162)
chr2 (1-46)||(7228042-7228087)
chr2 (1-46)||(14365698-14365743)
chr2 (1-45)||(14537198-14537242)
chr2 (1-52)||(33189287-33189338)
chr2 (1-44)||(41461631-41461674)
chr2 (1-47)||(784790-784836)
chr2 (1-47)||(11684596-11684642)
chr2 (1-46)||(769034-769079)
chr2 (1-46)||(11141303-11141348)
chr2 (1-46)||(17180295-17180340)
chr2 (1-46)||(27033488-27033533)
chr2 (1-38)||(28740602-28740639)
chr2 (469-514)||(45077925-45077970)
chr2 (4-44)||(13017779-13017819)
chr2 (469-513)||(31959718-31959762)
chr2 (1-44)||(1583839-1583882)
chr2 (1-36)||(11716515-11716550)
chr2 (1-44)||(14365815-14365858)
chr2 (1-36)||(30698289-30698324)
chr2 (1-47)||(41461512-41461558)
chr2 (9-47)||(41585710-41585748)
chr2 (9-38)||(3345852-3345881)
chr2 (1-38)||(11793901-11793938)
chr2 (469-514)||(19336934-19336979)
chr2 (474-511)||(34931631-34931668)
chr2 (1-46)||(39630223-39630268)
chr2 (9-38)||(44205678-44205707)
chr2 (469-513)||(9496063-9496107)
chr2 (469-513)||(18959108-18959152)
chr2 (475-515)||(42149707-42149747)
[»] scaffold1562 (1 HSPs)
scaffold1562 (1-38)||(521-558)
[»] scaffold1158 (1 HSPs)
scaffold1158 (1-38)||(2035-2072)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-46)||(42094-42139)
[»] scaffold0245 (1 HSPs)
scaffold0245 (469-513)||(16477-16521)
[»] scaffold0048 (1 HSPs)
scaffold0048 (1-38)||(82949-82986)
[»] scaffold0039 (1 HSPs)
scaffold0039 (9-53)||(109040-109084)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 255 - 514
Target Start/End: Original strand, 39776729 - 39776981
Alignment:
Q  255 actaagctaaatatcatgaaataaatacatatattgttaaattgaaaccagaaaccataaaatacttcacagaccttcaacattgattctggaacaatta 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  39776729 actaagctaaatatcatgaaataaatacatatattgttaaattgaaa-------ccataaaatacttcacagaccttcaacattgattctggaacaatta 39776821  T
Q  355 aaccaagaacctaaaacacattgcaaaagaaatataatgagctacataggtggctcccaaaattaattgcattaaattacacgaaagtaggtttgtgtaa 454  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39776822 aaccaagaacctaaaacacattgtaaaaaaaatataatgagctacataggtggctcccaaaattaattgcattaaattacacgaaagtaggtttgtgtat 39776921  T
Q  455 tacagacaagcaagacattgatcaaattatgccattctgttctatcataaaccatatttc 514  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  39776922 tacagacaagcaagacattgatcaaattacgccattgtgttctatcataaaccatatttc 39776981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 44 - 196
Target Start/End: Original strand, 39776560 - 39776712
Alignment:
Q  44 ttaggatttttctaaaatattaccttccatccatgccaagaattgtgagtgtattcttttggtcaccaaatgcaacagtgtaacgacagtgttcatgcaa 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39776560 ttaggatttttctaaaatattaccttccatccatgccaagaattgtgagtgtattcttttggtcaccaaatgcaacagtgtaacgacagtgttcatgcaa 39776659  T
Q  144 gcgaaactgagcaaatgaccactctgaattgaaatactttggcaacactcctg 196  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39776660 gtgaaactgagcaaatgaccactctgaattgaaatactttggcaacactcctg 39776712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 23536110 - 23536065
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||    
T  23536110 aacattacattccctcaaaacattcccccatccaaacacactctta 23536065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8224811 - 8224764
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttagg 48  Q
    |||||||||||||||||||||||| || |||||||||| |||||||||    
T  8224811 aacattacattccctcaaaacattccctcatccaaacacactcttagg 8224764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15034775 - 15034818
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  15034775 aacattacattccctcaaaacattcccccatccaaacacactct 15034818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 24273250 - 24273293
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  24273250 aacattacattccctcaaaacattcccccatccaaacacactct 24273293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27935601 - 27935648
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttagg 48  Q
    |||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  27935601 aacattacattccctcaaaatatttctccatccaaacacactcttagg 27935648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30190252 - 30190295
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  30190252 aacattacattccctcaaaacattcccccatccaaacacactct 30190295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 43623008 - 43623055
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttagg 48  Q
    ||||||||||||| |||||||||| ||||||||||||| |||||||||    
T  43623008 aacattacattccatcaaaacattcccccatccaaacacactcttagg 43623055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4038118 - 4038073
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||||||||||||||||||||||| ||||| ||||||| |||||||    
T  4038118 aacattacattccctcaaaacattcccccacccaaacacactctta 4038073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15034702 - 15034657
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||||||||||||||||||||||| | ||||||||||| |||||||    
T  15034702 aacattacattccctcaaaacattcctccatccaaacacactctta 15034657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 15245495 - 15245454
Alignment:
Q  9 attccctcaaaacatttccccatccaaacagactcttaggat 50  Q
    |||||||||||||||| ||||||||||||| |||||||||||    
T  15245495 attccctcaaaacattcccccatccaaacacactcttaggat 15245454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 26501109 - 26501154
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||||||||||||||||||||||| | ||||||||||| |||||||    
T  26501109 aacattacattccctcaaaacattcctccatccaaacacactctta 26501154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34756470 - 34756433
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  34756470 aacattacattccctcaaaacattcccccatccaaaca 34756433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 1290072 - 1290116
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||    
T  1290072 acatggatcaaattatgccataatgttctatcataaaccatattt 1290116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 5474457 - 5474414
Alignment:
Q  4 attacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||    
T  5474457 attaaattccctcaaaacattcccccatccaaacacactcttag 5474414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 516
Target Start/End: Original strand, 27072528 - 27072575
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatatttctg 516  Q
    |||| |||||||||| |||||  |||||||||||||||||||||||||    
T  27072528 acatggatcaaattacgccataatgttctatcataaaccatatttctg 27072575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 34007441 - 34007480
Alignment:
Q  9 attccctcaaaacatttccccatccaaacagactcttagg 48  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  34007441 attccctcaaaatatttccccatccaaacacactcttagg 34007480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 47165242 - 47165285
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||    
T  47165242 aacattacatttcctcaaaacatttctccatccaaacacactct 47165285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 27804305 - 27804271
Alignment:
Q  4 attacattccctcaaaacatttccccatccaaaca 38  Q
    ||||||||||||||||||||| |||||||||||||    
T  27804305 attacattccctcaaaacattcccccatccaaaca 27804271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 49659259 - 49659214
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||    
T  49659259 aacattacattccctcaatacatt-ccccatccaaacacactcttag 49659214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 514
Target Start/End: Complemental strand, 2544834 - 2544789
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatatttc 514  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||    
T  2544834 acatggatcaaattatgccataatgttctattataaaccatatttc 2544789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27804381 - 27804426
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    ||||||||||| |||||||||||| | ||||||||||| |||||||    
T  27804381 aacattacatttcctcaaaacattcctccatccaaacacactctta 27804426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45565437 - 45565400
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  45565437 aacattacattctctcaaaacattcccccatccaaaca 45565400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 6084216 - 6084172
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||    
T  6084216 acatggatcaaattacgccatattgttctatcataaaccatattt 6084172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 28090735 - 28090779
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||    
T  28090735 acatggatcaaattacgccataatgttctatcataaaccatattt 28090779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 509
Target Start/End: Original strand, 28511842 - 28511882
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccat 509  Q
    ||||||||||||||| |||||  ||||||||||||||||||    
T  28511842 acattgatcaaattacgccataatgttctatcataaaccat 28511882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32287963 - 32288007
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctt 45  Q
    ||||||||||||||||||||| || | ||||||||||| ||||||    
T  32287963 aacattacattccctcaaaactttcctccatccaaacacactctt 32288007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 32572975 - 32572935
Alignment:
Q  9 attccctcaaaacatttccccatccaaacagactcttagga 49  Q
    |||||||||||||||| ||||||||||||| ||||| ||||    
T  32572975 attccctcaaaacattcccccatccaaacacactctaagga 32572935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 39318370 - 39318326
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||    
T  39318370 acatggatcaaattacgccatagtgttctatcataaaccatattt 39318326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 50846803 - 50846759
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| ||||||||||||||||  ||||||||||||||| ||||||    
T  50846803 acatagatcaaattatgccataatgttctatcataaactatattt 50846759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 44208099 - 44207967
Alignment:
Q  64 taccttccatccatgccaagaattgtgagtgtattcttttggtcaccaaatgcaacagtgtaacgacagtgttcatgcaagcgaaactgagcaaatgacc 163  Q
    |||||||||||||||||||||||| ||| ||||||||||||  ||||||| ||||| |||||  ||      ||||||||| ||||| |||||| |||||    
T  44208099 taccttccatccatgccaagaattatgactgtattcttttgtacaccaaaagcaactgtgtactgagtaccctcatgcaagtgaaaccgagcaactgacc 44208000  T
Q  164 actctgaattgaaatactttggcaacactcctg 196  Q
    ||||||||||||||||||| |||||||||||||    
T  44207999 actctgaattgaaatacttgggcaacactcctg 44207967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31632765 - 31632714
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttaggattt 52  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||| ||||    
T  31632765 aacattacattccctcaaaacattcccccatccaaacacactcttagaattt 31632714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 40110854 - 40110901
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttagg 48  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||    
T  40110854 aacattacattccctcgaaacatttccccatccaaacacactcttagg 40110901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 40854089 - 40854135
Alignment:
Q  4 attacattccctcaaaacatttccccatccaaacagactcttaggat 50  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||    
T  40854089 attacattccctcagaacatttccccatccaaacacactcttaggat 40854135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43955560 - 43955514
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  43955560 aacattacattccctcaaaacattcccccatccaaacacactcttag 43955514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21636001 - 21636038
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21636001 aacattacattccctcaaaacatttccccatccaaaca 21636038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 40110780 - 40110735
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||    
T  40110780 aacattacattccctcaaaacattcccccatccaaacacactctta 40110735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 26162153 - 26162196
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  26162153 aacattacattccctcaaaacattcccccatccaaacacactct 26162196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34398965 - 34399008
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  34398965 aacattacattccctcaaaacattcccccatccaaacacactct 34399008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2057438 - 2057392
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||||    
T  2057438 aacattacattcgctcaaaacattcccccatccaaacacactcttag 2057392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 14603278 - 14603324
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||||    
T  14603278 aacaatacattccctcaaaacattcccccatccaaacacactcttag 14603324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35776971 - 35777017
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||||||||||||||||||||||| || |||||||||| ||||||||    
T  35776971 aacattacattccctcaaaacattccctcatccaaacacactcttag 35777017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 469 - 514
Target Start/End: Original strand, 26741935 - 26741980
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatatttc 514  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||    
T  26741935 acattgatcaaattacgccataatgttctatcataaaccatatttc 26741980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39342658 - 39342703
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||||    
T  39342658 aacaatacattccctcaaaacattcccccatccaaacacactctta 39342703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43955630 - 43955667
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  43955630 aacattacattccctcaaaacattcccccatccaaaca 43955667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6498781 - 6498824
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| | ||||||||||| |||||    
T  6498781 aacattacattccctcaaaacattcctccatccaaacacactct 6498824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28539184 - 28539227
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||    
T  28539184 aacaatacattccctcaaaacattcccccatccaaacacactct 28539227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35455847 - 35455804
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||    
T  35455847 aacaatacattccctcaaaacattcccccatccaaacacactct 35455804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5644720 - 5644674
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||||||||||||||||||||||| | |||| |||||| ||||||||    
T  5644720 aacattacattccctcaaaacattcctccattcaaacacactcttag 5644674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 511
Target Start/End: Original strand, 8492277 - 8492319
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatat 511  Q
    |||||||||||||||||||||  | ||||||||||||||||||    
T  8492277 acattgatcaaattatgccatagttttctatcataaaccatat 8492319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 511
Target Start/End: Original strand, 8519087 - 8519129
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatat 511  Q
    |||||||||||||||||||||  | ||||||||||||||||||    
T  8519087 acattgatcaaattatgccatagttttctatcataaaccatat 8519129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34388308 - 34388262
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||||||| || |||||||| ||||||||||||||||| ||||||||    
T  34388308 aacattacttttcctcaaaatatttccccatccaaacacactcttag 34388262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 511
Target Start/End: Complemental strand, 45903955 - 45903913
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatat 511  Q
    ||||||||||||||| |||||  ||||||||||||||||||||    
T  45903955 acattgatcaaattacgccatagtgttctatcataaaccatat 45903913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 29065862 - 29065817
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    ||||||||||||||||||||||||   ||||||||||| |||||||    
T  29065862 aacattacattccctcaaaacattcatccatccaaacacactctta 29065817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29639231 - 29639276
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    ||||||||||||||| |||||||| ||||||||| ||| |||||||    
T  29639231 aacattacattccctgaaaacattcccccatccatacacactctta 29639276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30629100 - 30629063
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  30629100 aacaatacattccctcaaaacattcccccatccaaaca 30629063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 31913271 - 31913234
Alignment:
Q  9 attccctcaaaacatttccccatccaaacagactctta 46  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  31913271 attccctcaaaacattcccccatccaaacacactctta 31913234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 514
Target Start/End: Original strand, 34341436 - 34341481
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatatttc 514  Q
    |||||| |||||||| |||||  |||||||||||||||||||||||    
T  34341436 acattggtcaaattacgccataatgttctatcataaaccatatttc 34341481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 514
Target Start/End: Original strand, 34926563 - 34926608
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatatttc 514  Q
    |||| |||||||||| ||||||  ||||||||||||||||||||||    
T  34926563 acatggatcaaattacgccattaagttctatcataaaccatatttc 34926608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 3457602 - 3457558
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||||||||||||||||||||  |||| |||||||||| ||||||    
T  3457602 acattgatcaaattatgccataatgttttatcataaacaatattt 3457558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 40979969 - 40980013
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||    
T  40979969 acatggatcaaattacgccatagtgttctatcataaaccatattt 40980013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7352928 - 7352976
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttagga 49  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7352928 aacattacattccctcaaaacatttccccatccaaacacactcttagga 7352976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1112648 - 1112595
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttaggattttt 54  Q
    ||||||||||| |||||||||||| ||||||||||||| |||||||||||||||    
T  1112648 aacattacatttcctcaaaacattcccccatccaaacacactcttaggattttt 1112595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 857355 - 857398
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  857355 aacattacattccctcaaaacatttccccatccaaacacactct 857398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28845987 - 28846030
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    ||||||| |||||||||||||||||||||||||||||| |||||    
T  28845987 aacattatattccctcaaaacatttccccatccaaacacactct 28846030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31473892 - 31473849
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  31473892 aacattacattccctcaaaacattcccccatccaaacacactct 31473849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 49111428 - 49111471
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  49111428 aacattacattccctcaaaacattcccccatccaaacacactct 49111471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4896748 - 4896794
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||||||||||||||||||| ||||||||||||||||| ||| ||||    
T  4896748 aacattacattccctcaaaatatttccccatccaaacacactattag 4896794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7352855 - 7352818
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  7352855 aacattacattccctcaaaacattcccccatccaaaca 7352818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10633075 - 10633038
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  10633075 aacattacattccctcaaaacattcccccatccaaaca 10633038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 469 - 514
Target Start/End: Complemental strand, 12443336 - 12443291
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatatttc 514  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||    
T  12443336 acatggatcaaattatgccataatgttctatcataaaccatatttc 12443291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31742880 - 31742924
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctt 45  Q
    |||||||||||||||||||||||| | ||||||||||| ||||||    
T  31742880 aacattacattccctcaaaacattcctccatccaaacacactctt 31742924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 14982323 - 14982280
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| | ||||||||||| |||||    
T  14982323 aacattacattccctcaaaacattcctccatccaaacacactct 14982280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15660299 - 15660342
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| || |||||||||| |||||    
T  15660299 aacattacattccctcaaaacattccctcatccaaacacactct 15660342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 16516214 - 16516171
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    ||||||||||||| |||||||||| ||||||||||||| |||||    
T  16516214 aacattacattccgtcaaaacattcccccatccaaacacactct 16516171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36455950 - 36455907
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    ||||||| |||||||||||||||| ||||||||||||| |||||    
T  36455950 aacattagattccctcaaaacattcccccatccaaacacactct 36455907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 36456045 - 36456088
Alignment:
Q  4 attacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    ||||||||||||||||||||| | ||||||||||| ||||||||    
T  36456045 attacattccctcaaaacattcctccatccaaacacactcttag 36456088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 513
Target Start/End: Complemental strand, 53540526 - 53540487
Alignment:
Q  474 gatcaaattatgccattctgttctatcataaaccatattt 513  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  53540526 gatcaaattatgccataatgttctatcataaaccatattt 53540487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4441380 - 4441338
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactc 43  Q
    |||||||||||||||||||||||| | ||||||||||| ||||    
T  4441380 aacattacattccctcaaaacattccaccatccaaacacactc 4441338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 514
Target Start/End: Original strand, 13805306 - 13805351
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatatttc 514  Q
    |||| ||||||||||| ||||  |||||||||||||||||||||||    
T  13805306 acatggatcaaattatcccataatgttctatcataaaccatatttc 13805351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28845914 - 28845877
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||||||||||||||||||||||| | |||||||||||    
T  28845914 aacattacattccctcaaaacattcctccatccaaaca 28845877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 41498606 - 41498651
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||||||||||||||||||| ||| | ||||||||||| |||||||    
T  41498606 aacattacattccctcaaaatattcctccatccaaacacactctta 41498651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42542983 - 42543020
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||||||||||||||||||||||| | |||||||||||    
T  42542983 aacattacattccctcaaaacattccaccatccaaaca 42543020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42844659 - 42844696
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  42844659 aacattacattacctcaaaatatttccccatccaaaca 42844696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17110912 - 17110866
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  17110912 aacattacattccctcaaaacatttccccatccaaacacactcttag 17110866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3853659 - 3853616
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  3853659 aacattacattccctcaaaacattcccccatccaaacacactct 3853616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3858117 - 3858074
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  3858117 aacattacattccctcaaaacattcccccatccaaacacactct 3858074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 17110985 - 17111028
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||||| ||||||||||| |||||    
T  17110985 aacattacattccctcaaaacatttctccatccaaacacactct 17111028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 36103144 - 36103097
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttagg 48  Q
    |||||||||||||||||||||||| | ||||||||||| |||||||||    
T  36103144 aacattacattccctcaaaacattcctccatccaaacacactcttagg 36103097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 14800014 - 14799973
Alignment:
Q  9 attccctcaaaacatttccccatccaaacagactcttaggat 50  Q
    |||||||||||||||| ||||||||||||| |||||||||||    
T  14800014 attccctcaaaacattcccccatccaaacacactcttaggat 14799973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14991735 - 14991690
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    ||||||||||| |||||||||||| ||||||||||||| |||||||    
T  14991735 aacattacattacctcaaaacattcccccatccaaacacactctta 14991690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27322689 - 27322734
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    ||||||||||||||||||||||||  |||||||||||| |||||||    
T  27322689 aacattacattccctcaaaacattctcccatccaaacacactctta 27322734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30435289 - 30435252
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  30435289 aacattacattccctcaaaacatttctccatccaaaca 30435252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42711396 - 42711441
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||||||||||||||||||||||| ||| ||||||||| |||||||    
T  42711396 aacattacattccctcaaaacattccccaatccaaacacactctta 42711441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 33377345 - 33377385
Alignment:
Q  9 attccctcaaaacatttccccatccaaacagactcttagga 49  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  33377345 attccctcaaaacattcccccatccaaacacactcttagga 33377385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14281 - 14235
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttagg 48  Q
    |||||||||||||||| ||||||| ||||||||||||| |||||||||    
T  14281 aacattacattccctccaaacatt-ccccatccaaacacactcttagg 14235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 24045003 - 24044960
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| || |||||||||| |||||    
T  24045003 aacattacattccctcaaaacattccctcatccaaacacactct 24044960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28324702 - 28324745
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| | ||||||||||| |||||    
T  28324702 aacattacattccctcaaaacattcctccatccaaacacactct 28324745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29257391 - 29257434
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||    
T  29257391 aacaatacattccctcaaaacattcccccatccaaacacactct 29257434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 30435350 - 30435385
Alignment:
Q  9 attccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||||||||| |||||    
T  30435350 attccctcaaaacatttccccatccaaacacactct 30435385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 33902710 - 33902667
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| | ||||||||||| |||||    
T  33902710 aacattacattccctcaaaacattcctccatccaaacacactct 33902667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40046847 - 40046800
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttagg 48  Q
    ||||||||||||||||||||||||   ||||||||||| |||||||||    
T  40046847 aacattacattccctcaaaacattcatccatccaaacacactcttagg 40046800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32626074 - 32626120
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||||||||||||||||||| ||| |||||||||| || ||||||||    
T  32626074 aacattacattccctcaaaagattcccccatccaagcacactcttag 32626120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3853732 - 3853769
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  3853732 aacattacattacctcaaaatatttccccatccaaaca 3853769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3858190 - 3858227
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  3858190 aacattacattacctcaaaatatttccccatccaaaca 3858227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8689175 - 8689138
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  8689175 aacattacattccttcaaaacatttctccatccaaaca 8689138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13404870 - 13404833
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  13404870 aacattacattacctcaaaatatttccccatccaaaca 13404833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 23011777 - 23011732
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    ||||||||||||||||||||||||  ||| |||||||| |||||||    
T  23011777 aacattacattccctcaaaacattctcccgtccaaacacactctta 23011732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 514
Target Start/End: Complemental strand, 32931201 - 32931156
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatatttc 514  Q
    |||| ||||||||||||||||  |||||||||||| ||||||||||    
T  32931201 acatggatcaaattatgccataatgttctatcatacaccatatttc 32931156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44346718 - 44346755
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  44346718 aacaatacattccctcaaaacattcccccatccaaaca 44346755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 490576 - 490532
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||    
T  490576 acatggatcaaattacgccataatgttctatcataaaccatattt 490532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 29520890 - 29520846
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||    
T  29520890 acatggatcaaattacgccataatgttctatcataaaccatattt 29520846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 35914642 - 35914686
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||    
T  35914642 acatggatcaaattacgccataatgttctatcataaaccatattt 35914686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 42711335 - 42711295
Alignment:
Q  13 cctcaaaacatttccccatccaaacagactcttaggatttt 53  Q
    |||||||||||||||||||||||||| ||||| ||| ||||    
T  42711335 cctcaaaacatttccccatccaaacacactctaaggttttt 42711295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 43904706 - 43904750
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||    
T  43904706 acatggatcaaattacgccataatgttctatcataaaccatattt 43904750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25935317 - 25935370
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttaggattttt 54  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||| ||||||    
T  25935317 aacattacattccctcaaaacattcccccatccaaacacactcttagaattttt 25935370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40643933 - 40643981
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttagga 49  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  40643933 aacattacattccctcaaaacattcccccatccaaacacactcttagga 40643981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 5658819 - 5658772
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttagg 48  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||    
T  5658819 aacattacattccctcaaaacatttctccatccaaacacactcttagg 5658772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 927345 - 927299
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||    
T  927345 aacaatacattccctcaaaacatttccccatccaaacacactcttag 927299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15374076 - 15374121
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||    
T  15374076 aacattacattccctcaaaacattcccccatccaaacacactctta 15374121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15804410 - 15804447
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15804410 aacattacattccctcaaaacatttccccatccaaaca 15804447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32470925 - 32470872
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttaggattttt 54  Q
    |||||||||||||||||||||||||| ||||||||| | ||||||||| |||||    
T  32470925 aacattacattccctcaaaacatttctccatccaaatacactcttaggcttttt 32470872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 41762242 - 41762290
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttagga 49  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||||||    
T  41762242 aacaatacattccctcaaaacattcccccatccaaacacactcttagga 41762290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 22303897 - 22303940
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  22303897 aacattacattccctcaaaacattcccccatccaaacacactct 22303940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40809384 - 40809337
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttagg 48  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||||||    
T  40809384 aacattatattctctcaaaacatttccccatccaaacacactcttagg 40809337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40809457 - 40809508
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttaggattt 52  Q
    |||||||||||| ||||||||||||||||||| ||||| ||||| |||||||    
T  40809457 aacattacattctctcaaaacatttccccatctaaacacactctaaggattt 40809508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 2316418 - 2316376
Alignment:
Q  4 attacattccctcaaaacatttccccatccaaacagactctta 46  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  2316418 attacattccctcaaaacattcccccatccaaacacactctta 2316376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40090441 - 40090487
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    ||||||||||| |||||||||||| ||||||||||||| ||||||||    
T  40090441 aacattacatttcctcaaaacattcccccatccaaacacactcttag 40090487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2721587 - 2721624
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  2721587 aacattacattccctcaaaacattcccccatccaaaca 2721624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 469 - 514
Target Start/End: Complemental strand, 9235288 - 9235243
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatatttc 514  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||    
T  9235288 acatggatcaaattatgccataatgttctatcataaaccatatttc 9235243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9894349 - 9894386
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  9894349 aacattacattccctcaaaacattcccccatccaaaca 9894386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28828410 - 28828373
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  28828410 aacattacattccctcaaaacattcccccatccaaaca 28828373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 5558382 - 5558338
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||    
T  5558382 acatggatcaaattatgccatagtgttctatcataaaccatattt 5558338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37145528 - 37145564
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaac 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  37145528 aacattacattccctcaaaacattcccccatccaaac 37145564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 2550363 - 2550324
Alignment:
Q  9 attccctcaaaacatttccccatccaaacagactcttagg 48  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  2550363 attccctcaaaacattcccccatccaaacacactcttagg 2550324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9764454 - 9764497
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||| ||||||| ||||||||||||| |||||    
T  9764454 aacattacattccctcgaaacattcccccatccaaacacactct 9764497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 15804365 - 15804322
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||    
T  15804365 aacactacattccctcaaaacattcccccatccaaacacactct 15804322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 22766995 - 22766952
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    ||||||| |||||||||||||||| ||||||||||||| |||||    
T  22766995 aacattatattccctcaaaacattcccccatccaaacacactct 22766952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 26281296 - 26281339
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    ||||||||||||||||||||| || ||||||||||||| |||||    
T  26281296 aacattacattccctcaaaacgttcccccatccaaacacactct 26281339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 33245399 - 33245446
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttagg 48  Q
    ||||||||||||| |||||||||| ||||||||||||| |||| ||||    
T  33245399 aacattacattccatcaaaacattcccccatccaaacacactcatagg 33245446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 37722921 - 37722964
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||    
T  37722921 aacattacattccctcaaaatattcccccatccaaacacactct 37722964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3563320 - 3563278
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactc 43  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||    
T  3563320 aacattacattccctcaaaacattcccctatccaaacacactc 3563278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9764381 - 9764335
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||||||| ||||||||||| ||| ||||||||||||| ||||||||    
T  9764381 aacattactttccctcaaaatattcccccatccaaacacactcttag 9764335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 20523249 - 20523291
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactc 43  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||    
T  20523249 aacattacattctctcaaaacattcccccatccaaacacactc 20523291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 22305147 - 22305109
Alignment:
Q  9 attccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  22305147 attccctcaaaacattcccccatccaaacacactcttag 22305109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 34982254 - 34982212
Alignment:
Q  6 tacattccctcaaaacatttccccatccaaacagactcttagg 48  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||    
T  34982254 tacattccctcaaaacattcccctatccaaacacactcttagg 34982212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19533934 - 19533971
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||||||||||||||||||||||| | |||||||||||    
T  19533934 aacattacattccctcaaaacattcctccatccaaaca 19533971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23092078 - 23092123
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    ||||||||||||  |||||||||| ||||||||||||| |||||||    
T  23092078 aacattacattcgttcaaaacattcccccatccaaacacactctta 23092123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28828463 - 28828500
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  28828463 aacattacattacctcaaaatatttccccatccaaaca 28828500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 32250125 - 32250169
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||||    
T  32250125 aacattactttccctcaaaaca-ttccccatccaaacacactctta 32250169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 6859622 - 6859578
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| ||| ||||||||||||  ||||||||||||||||||||||    
T  6859622 acatggataaaattatgccataatgttctatcataaaccatattt 6859578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 18855848 - 18855804
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| ||||||||||||| ||  ||||||||||||||||||||||    
T  18855848 acatggatcaaattatgctataatgttctatcataaaccatattt 18855804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 20523173 - 20523133
Alignment:
Q  4 attacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||  |||||||||||| |||||    
T  20523173 attacattccctcaaaacattctcccatccaaacacactct 20523133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 49457386 - 49457333
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttaggattttt 54  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||    
T  49457386 aacattacattccctcaaaacattcccccatccaaacacactcttaggaatttt 49457333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 42005982 - 42006029
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttagg 48  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||    
T  42005982 aacattacattccctcaaaacattcccccatccaaacacactcttagg 42006029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 44436301 - 44436254
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttagg 48  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||    
T  44436301 aacattacattccctcaaaacattcccccatccaaacacactcttagg 44436254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 35279931 - 35279980
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttaggat 50  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||||    
T  35279931 aacattacattccctcaaaacattcccccatccaaacacattcttaggat 35279980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 44692938 - 44692999
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttaggatttttctaaaata 62  Q
    |||||||||||||||||||||||| | ||||||||||| ||||||||| ||| | |||||||    
T  44692938 aacattacattccctcaaaacattcctccatccaaacacactcttagggtttctttaaaata 44692999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27252010 - 27252057
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttagg 48  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||    
T  27252010 aacattacattccctcaaaacatccccccatccaaacacactcttagg 27252057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 46672832 - 46672875
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  46672832 aacattacattccctcaaaacattcccccatccaaacacactct 46672875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 47767475 - 47767432
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  47767475 aacattacattccctcaaaacattcccccatccaaacacactct 47767432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34088614 - 34088568
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  34088614 aacaatacattccctcaaaacatttctccatccaaacacactcttag 34088568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9129460 - 9129505
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||||||||||||||||||||||| || |||||||||| |||||||    
T  9129460 aacattacattccctcaaaacattccctcatccaaacacactctta 9129505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9137567 - 9137612
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||||||||||||||||||||||| || |||||||||| |||||||    
T  9137567 aacattacattccctcaaaacattccctcatccaaacacactctta 9137612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 40106661 - 40106705
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||    
T  40106661 acattgatcaaattatgtcataatgttctatcataaaccatattt 40106705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 54128620 - 54128576
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||    
T  54128620 acatggatcaaattatgccataatgttctatcataaaccatattt 54128576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2732682 - 2732639
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    ||||||| ||| |||||||||||||||||||||||||| |||||    
T  2732682 aacattatattacctcaaaacatttccccatccaaacacactct 2732639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 25655350 - 25655315
Alignment:
Q  9 attccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||||||||| |||||    
T  25655350 attccctcaaaacatttccccatccaaacacactct 25655315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 36398018 - 36398061
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||    
T  36398018 aacaatacattccctcaaaacattcccccatccaaacacactct 36398061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37054437 - 37054394
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    ||||||||||||||| |||||||| ||||||||||||| |||||    
T  37054437 aacattacattcccttaaaacattcccccatccaaacacactct 37054394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 44692865 - 44692822
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||| ||||||||||||||| ||||||||||||| |||||    
T  44692865 aacattactttccctcaaaacattcccccatccaaacacactct 44692822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 512
Target Start/End: Original strand, 45486890 - 45486933
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatatt 512  Q
    |||| ||||||||||||||||  |||||||||||||||||||||    
T  45486890 acatggatcaaattatgccataatgttctatcataaaccatatt 45486933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 25655403 - 25655441
Alignment:
Q  9 attccctcaaaacatttccccatccaaacagactcttag 47  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  25655403 attccgtcaaaacatttccccatccaaacacactcttag 25655441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 53129872 - 53129918
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||||||||||||||| ||||||| || |||||||||| ||||||||    
T  53129872 aacattacattccctcgaaacattccctcatccaaacacactcttag 53129918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7302389 - 7302344
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||||||||||| ||||||||||| || |||||||||| |||||||    
T  7302389 aacattacattctctcaaaacattccctcatccaaacacactctta 7302344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21307561 - 21307598
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  21307561 aacattacattcccgcaaaacattcccccatccaaaca 21307598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 513
Target Start/End: Original strand, 45289131 - 45289176
Alignment:
Q  468 gacattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    ||||| ||||||||||||| ||  ||||||||||||||||||||||    
T  45289131 gacatggatcaaattatgctataatgttctatcataaaccatattt 45289176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 514
Target Start/End: Complemental strand, 49841857 - 49841812
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatatttc 514  Q
    |||| ||||||||||||||||  |||||||||||| ||||||||||    
T  49841857 acatggatcaaattatgccataatgttctatcatataccatatttc 49841812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 5415826 - 5415782
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctt 45  Q
    |||||||||||||||||||| ||| ||| ||||||||| ||||||    
T  5415826 aacattacattccctcaaaatattcccctatccaaacacactctt 5415782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 38060955 - 38060911
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||    
T  38060955 acatggatcaaattacgccatggtgttctatcataaaccatattt 38060911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 514
Target Start/End: Original strand, 40116384 - 40116424
Alignment:
Q  474 gatcaaattatgccattctgttctatcataaaccatatttc 514  Q
    |||||||||| |||||  |||||||||||||||||||||||    
T  40116384 gatcaaattacgccataatgttctatcataaaccatatttc 40116424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 48508476 - 48508432
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||    
T  48508476 acatggatcaaattacgccatagtgttctatcataaaccatattt 48508432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8574781 - 8574829
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttagga 49  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  8574781 aacattacattcactcaaaacatttccccatccaaacacactcttagga 8574829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6919823 - 6919870
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttagg 48  Q
    |||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  6919823 aacattactttccctcaaaacattcccccatccaaacacactcttagg 6919870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 8574738 - 8574695
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||| ||||||||||||||||||||||||| |||||    
T  8574738 aacattacattcactcaaaacatttccccatccaaacacactct 8574695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9285690 - 9285647
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  9285690 aacattacattccctcaaaacattcccccatccaaacacactct 9285647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 776196 - 776242
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    ||||||||||||||||||||||||| || ||||||||| ||||||||    
T  776196 aacattacattccctcaaaacattttcctatccaaacacactcttag 776242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 8475214 - 8475176
Alignment:
Q  9 attccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  8475214 attccctcaaaacatttccccatccaaacacactcttag 8475176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28918208 - 28918162
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||||||||||||||||||||||| | ||||||||||| ||||||||    
T  28918208 aacattacattccctcaaaacattcctccatccaaacacactcttag 28918162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9763055 - 9763018
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  9763055 aacattacattccctcaaaacatttccccttccaaaca 9763018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 33733472 - 33733432
Alignment:
Q  4 attacattccctcaaaacatttccccatccaaacagactct 44  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  33733472 attacattccctcaaaacattcccccatccaaacacactct 33733432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 34245010 - 34245062
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttaggatttt 53  Q
    |||||||||||||||||||||||| | ||||||||||| ||||| ||| ||||    
T  34245010 aacattacattccctcaaaacattcctccatccaaacacactctaagggtttt 34245062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 776123 - 776080
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||    
T  776123 aacattacattccctcaaaacatttctccatctaaacacactct 776080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 514
Target Start/End: Original strand, 34546 - 34591
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatatttc 514  Q
    |||| |||||||||| |||||  |||||||||||||||||||||||    
T  34546 acatggatcaaattacgccataatgttctatcataaaccatatttc 34591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 1195384 - 1195343
Alignment:
Q  11 tccctcaaaacatttccccatccaaacagactcttaggattt 52  Q
    |||||||||||||| ||||||||||||| |||||||| ||||    
T  1195384 tccctcaaaacattcccccatccaaacacactcttagtattt 1195343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15299541 - 15299577
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||||||||||||||||||||| |||||||||||||||    
T  15299541 aacattacattccctcaaaaca-ttccccatccaaaca 15299577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 5096075 - 5096031
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||    
T  5096075 acatagatcaaattacgccataatgttctatcataaaccatattt 5096031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 12890816 - 12890772
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||    
T  12890816 acatggatcaaattacgccatagtgttctatcataaaccatattt 12890772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 30031497 - 30031453
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||    
T  30031497 acatggatcaaattacgccatagtgttctatcataaaccatattt 30031453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10480162 - 10480116
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  10480162 aacattacattccctcaaaacattcccccatccaaacacactcttag 10480116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 7228042 - 7228087
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||    
T  7228042 aacattacattctctcaaaacatttccccatccaaacacactctta 7228087  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14365743 - 14365698
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||    
T  14365743 aacattacattccctcaaaacattcccccatccaaacacactctta 14365698  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 14537242 - 14537198
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctt 45  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||    
T  14537242 aacattacattccctcaaaacattcccccatccaaacacactctt 14537198  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 33189287 - 33189338
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttaggattt 52  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||||| ||||    
T  33189287 aacaatacattccctcaaaacattcccccatccaaacacactcttagaattt 33189338  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 41461631 - 41461674
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  41461631 aacattacattccctcaaaacattcccccatccaaacacactct 41461674  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 784836 - 784790
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||||    
T  784836 aacattacattccctcaaaacatttttccatccaaacacactcttag 784790  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11684642 - 11684596
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||||||||||||||||||||||| ||||||||||||| | ||||||    
T  11684642 aacattacattccctcaaaacattcccccatccaaacacattcttag 11684596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 769079 - 769034
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||||    
T  769079 aacaatacattccctcaaaacattcccccatccaaacacactctta 769034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11141348 - 11141303
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||||    
T  11141348 aacaatacattccctcaaaacattcccccatccaaacacactctta 11141303  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17180340 - 17180295
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||||||||||||||||||||||| || |||||||||| |||||||    
T  17180340 aacattacattccctcaaaacattccctcatccaaacacactctta 17180295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 27033533 - 27033488
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||||||||||| ||||||||||| ||||||||||||| |||||||    
T  27033533 aacattacattctctcaaaacattcccccatccaaacacactctta 27033488  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28740639 - 28740602
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  28740639 aacattacattccctcaaaacatttccccattcaaaca 28740602  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 469 - 514
Target Start/End: Complemental strand, 45077970 - 45077925
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatatttc 514  Q
    |||| ||||||||||||||||| ||||||||||||||| |||||||    
T  45077970 acatggatcaaattatgccattatgttctatcataaactatatttc 45077925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 13017819 - 13017779
Alignment:
Q  4 attacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  13017819 attacattccctcaaaacatttccacatccaaacacactct 13017779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 31959762 - 31959718
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||    
T  31959762 acatggatcaaattatgccatagtgttctatcataaaccatattt 31959718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1583839 - 1583882
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||    
T  1583839 aacaatacattccctcaaaacattcccccatccaaacacactct 1583882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 11716515 - 11716550
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaa 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  11716515 aacattacattccctcaaaacattcccccatccaaa 11716550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14365815 - 14365858
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactct 44  Q
    |||||||||||||||||||||||| | ||||||||||| |||||    
T  14365815 aacattacattccctcaaaacattcctccatccaaacacactct 14365858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 30698324 - 30698289
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaa 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  30698324 aacattacattccctcaaaacattcccccatccaaa 30698289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 41461558 - 41461512
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactcttag 47  Q
    ||||||||||| |||||||| ||||||||||||||||| ||| ||||    
T  41461558 aacattacattacctcaaaatatttccccatccaaacacactattag 41461512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 41585710 - 41585748
Alignment:
Q  9 attccctcaaaacatttccccatccaaacagactcttag 47  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  41585710 attccctcaaaacatttcaccatccaaacacactcttag 41585748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 3345852 - 3345881
Alignment:
Q  9 attccctcaaaacatttccccatccaaaca 38  Q
    ||||||||||||||||||||||||||||||    
T  3345852 attccctcaaaacatttccccatccaaaca 3345881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11793938 - 11793901
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  11793938 aacattacattccctcaaaatattcccccatccaaaca 11793901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 514
Target Start/End: Original strand, 19336934 - 19336979
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatatttc 514  Q
    |||| |||||||||| |||||  |||||||||||||||||||||||    
T  19336934 acatggatcaaattacgccataatgttctatcataaaccatatttc 19336979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 34931668 - 34931631
Alignment:
Q  474 gatcaaattatgccattctgttctatcataaaccatat 511  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  34931668 gatcaaattatgccataatgttctatcataaaccatat 34931631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 39630268 - 39630223
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    |||| ||||||||||||||||||||| |||| |||||| |||||||    
T  39630268 aacaatacattccctcaaaacatttctccattcaaacacactctta 39630223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 44205678 - 44205707
Alignment:
Q  9 attccctcaaaacatttccccatccaaaca 38  Q
    ||||||||||||||||||||||||||||||    
T  44205678 attccctcaaaacatttccccatccaaaca 44205707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 9496107 - 9496063
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||    
T  9496107 acatggatcaaattacgccataatgttctatcataaaccatattt 9496063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 18959152 - 18959108
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| ||||||||||||||||  |||||||||||| |||||||||    
T  18959152 acatggatcaaattatgccataatgttctatcatagaccatattt 18959108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 475 - 515
Target Start/End: Original strand, 42149707 - 42149747
Alignment:
Q  475 atcaaattatgccattctgttctatcataaaccatatttct 515  Q
    ||||||||| |||||  ||||||||||||||||||||||||    
T  42149707 atcaaattacgccataatgttctatcataaaccatatttct 42149747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 521 - 558
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  521 aacattacattccctcaaaacattcccccatccaaaca 558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2072 - 2035
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  2072 aacattacattccctcaaaacattcccccatccaaaca 2035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42094 - 42139
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaacagactctta 46  Q
    ||||||||||||||||||||| || ||||||||||||| |||||||    
T  42094 aacattacattccctcaaaacgttcccccatccaaacacactctta 42139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 16477 - 16521
Alignment:
Q  469 acattgatcaaattatgccattctgttctatcataaaccatattt 513  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||    
T  16477 acatggatcaaattatgccataatgttctatcataaaccatattt 16521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 82986 - 82949
Alignment:
Q  1 aacattacattccctcaaaacatttccccatccaaaca 38  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  82986 aacattacattccctcaaaacattcacccatccaaaca 82949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 109084 - 109040
Alignment:
Q  9 attccctcaaaacatttccccatccaaacagactcttaggatttt 53  Q
    |||||||||||||||| ||||||||||||| ||||| | ||||||    
T  109084 attccctcaaaacattcccccatccaaacacactctaaagatttt 109040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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