View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12765_low_5 (Length: 500)
Name: NF12765_low_5
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12765_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 23 - 490
Target Start/End: Complemental strand, 30522584 - 30522116
Alignment:
| Q |
23 |
acctaatactttcatgccatttggaaatggggtccatgcatgtcctggcaatgaattagcaaagttggagattttggttcttgtacatcatctaaccaca |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30522584 |
acctaatactttcatgccatttggaaatggggtccatgcatgtcctggcaatgaattagcaaagttggagattttggttcttgtacatcatctaaccaca |
30522485 |
T |
|
| Q |
123 |
aagtacaggttggtatactcaactattattattatatttgacaacgagtttgtcaggattacaatgttactgtaatcttgtcaaactcgctgtaacttca |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
30522484 |
aagtacaggttggtatactcaactattattattatatttgacaacgagtttgtcaggattacaatgttaatgtaatcttgtcaaactcgttgtaacttca |
30522385 |
T |
|
| Q |
223 |
aacattcatttagtttatctaagttgttgggtcagaattagtcgatttatatcaaaacttcgacaaaatggaaatttagaatctcaaatctttgattctg |
322 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30522384 |
aacatacatttagtttatctaagttgttgcgtcagaattagtcgatttatatcaaaacttcgacaaaacggaaatttagaatctcaaatctttgattctg |
30522285 |
T |
|
| Q |
323 |
aatctcagaccaacgactaagatcaccgactattgtgaactttgattacatagaaatcaatcacatttttactcaatgca--nnnnnnnnagtctagttt |
420 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
30522284 |
aatctcaaaccaacgactaagatcaccgactattgtgaactttgattacatagaaatcaatcacatttttactcaatgcattttttttttagt-tagttt |
30522186 |
T |
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| Q |
421 |
aaaattataataatgttttagaaatattctaaagtgtggctgctattatttattgtgtaggtggtctgtg |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30522185 |
aaaattataataatgttttagaaatattctaaagtgtggctgctattatttattgtgtaggtggtctgtg |
30522116 |
T |
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Back To:
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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 10424401 - 10424511
Alignment:
| Q |
27 |
aatactttcatgccatttggaaatggggtccatgcatgtcctggcaatgaattagcaaagttggagattttggttcttgtacatcatctaaccacaaagt |
126 |
Q |
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|||||||| ||||||||||| | |||| |||| || |||||||||||||||||||| ||| |||||||||| || || |||| ||||| |||||||||| |
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| T |
10424401 |
aatacttttatgccatttggcagtgggatccacgcttgtcctggcaatgaattagccaagatggagattttagtcctcttacaccatctgaccacaaagt |
10424500 |
T |
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| Q |
127 |
acaggttggta |
137 |
Q |
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||||||||||| |
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| T |
10424501 |
acaggttggta |
10424511 |
T |
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