View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12765_low_7 (Length: 489)

Name: NF12765_low_7
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12765_low_7
NF12765_low_7
[»] chr8 (11 HSPs)
chr8 (10-472)||(15213985-15214447)
chr8 (10-356)||(13033668-13034014)
chr8 (12-356)||(15052796-15053140)
chr8 (10-356)||(15066993-15067339)
chr8 (10-371)||(15029969-15030327)
chr8 (22-165)||(15047723-15047866)
chr8 (10-179)||(15751416-15751585)
chr8 (12-190)||(15000418-15000596)
chr8 (248-341)||(4506131-4506224)
chr8 (321-356)||(15047925-15047960)
chr8 (239-272)||(15047886-15047919)
[»] chr7 (3 HSPs)
chr7 (10-343)||(1617753-1618086)
chr7 (10-343)||(1626303-1626636)
chr7 (286-342)||(1631265-1631321)


Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 10 - 472
Target Start/End: Complemental strand, 15214447 - 15213985
Alignment:
Q  10 tgaaggagagcatagaaagaccagataaggttttattcttgaaatatgaagaccttaaagaagatgttaattttaacatcaaaagaattgcagaatttgt 109  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  15214447 tgaaggagagcatagaaagaccagatagggttttattcttgaaatatgaagaccttaaagaagatgttaattttcacacgaaaagaattgcagaatttgt 15214348  T
Q  110 tggatttcctttcactgaagaagaggaaaataatggagtgattgaaaatataatcaagttatgcagctttgagagtatgaaagaaatagagggaaatcaa 209  Q
     ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15214347 gggaattcctttcactcaagaagaggaaaataatggagtgattgaaaatataatcaagttatgcagctttgagagtatgaaagaaatagagggaaatcaa 15214248  T
Q  210 tctggaactgtatcaggagacattgagaaagagttttactttcgaaagggagaaataggggattgggcaaattacctttcctcttcaatggtagagaaac 309  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15214247 tctggaactatatcaggagacattgagaaagagttttactttcgaaagggagaaataggggattgggcaaattacctttcctcttcaatggtagagaaac 15214148  T
Q  310 tttccaaagtcatagaagaaaaattaagtggatcaagtctatcattttaagtgtgcgcttaaattttatgatatgttattgtatttaaagcattgcatgt 409  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15214147 tttccaaagtcatggaagaaaaattaaatggatcaagtctatcatttaaagtgtgcgcttaaattttatgatatgttattgtatttaaagcattgcatgt 15214048  T
Q  410 aaaaccaatatgtagaaatggtttccannnnnnngcaaatgaaagagatgttgcatgtcgagt 472  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  15214047 aaaaccaatatgtagaaatggtttccatttttttgcaaatgaaagagatgttgcatgtcgagt 15213985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 356
Target Start/End: Original strand, 13033668 - 13034014
Alignment:
Q  10 tgaaggagagcatagaaagaccagataaggttttattcttgaaatatgaagaccttaaagaagatgttaattttaacatcaaaagaattgcagaatttgt 109  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  13033668 tgaaggagagtatagaaagaccacataaggttttattcttgaaatatgaagaccttaaagaagatgttaattttcacatcaaaagaattgcagagtttgt 13033767  T
Q  110 tggatttcctttcactgaagaagaggaaaataatggagtgattgaaaatataatcaagttatgcagctttgagagtatgaaagaaatagagggaaatcaa 209  Q
     ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||  | |||||||||||    
T  13033768 gggatttcctttcactcaagaagaggaaaataatggagtggttgaaaatataatcaagttatgcagctttgagagtatgaaggaatcaaagggaaatcaa 13033867  T
Q  210 tctggaactgtatcaggagacattgagaaagagttttactttcgaaagggagaaataggggattgggcaaattacctttcctcttcaatggtagagaaac 309  Q
    |||| ||||||||||  |  |  ||||||| |||||| ||||||||||||||||||||| ||||||| ||||||| ||||  |||||||| |||| | |     
T  13033868 tctgaaactgtatcaacaatctatgagaaaaagtttttctttcgaaagggagaaataggagattgggtaaattacttttctccttcaatgatagaaagat 13033967  T
Q  310 tttccaaagtcatagaagaaaaattaagtggatcaagtctatcattt 356  Q
    | ||||||||||||||||||||||||||||||||||  |||||||||    
T  13033968 tatccaaagtcatagaagaaaaattaagtggatcaaacctatcattt 13034014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 12 - 356
Target Start/End: Original strand, 15052796 - 15053140
Alignment:
Q  12 aaggagagcatagaaagaccagataaggttttattcttgaaatatgaagaccttaaagaagatgttaattttaacatcaaaagaattgcagaatttgttg 111  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15052796 aaggaaagcatagaaagaccatatagggttttattcttgaaatatgaagaccttaaagaagatgttaattttaacatcaaaagaattgcagaatttgttg 15052895  T
Q  112 gatttcctttcactgaagaagaggaaaataatggagtgattgaaaatataatcaagttatgcagctttgagagtatgaaagaaatagagggaaatcaatc 211  Q
    || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | | |||||| | ||    
T  15052896 gaattcctttcactcaagaagaggaaaataatggagtgattgaaaatataatcaagttatgcagctttgagagtatgaaagaatcaaatggaaataattc 15052995  T
Q  212 tggaactgtatcaggagacattgagaaagagttttactttcgaaagggagaaataggggattgggcaaattacctttcctcttcaatggtagagaaactt 311  Q
    |||||||||| ||| | |  |||| | |||||||| ||||||||||||||||||||||||||||| ||||||| ||||  |||||||| |||| | | |     
T  15052996 tggaactgtaacagtaaatgttgacagagagtttttctttcgaaagggagaaataggggattgggtaaattacttttctccttcaatgatagaaagatta 15053095  T
Q  312 tccaaagtcatagaagaaaaattaagtggatcaagtctatcattt 356  Q
    |||||| ||||  |||||||||| ||||||||||| |||||||||    
T  15053096 tccaaaatcatgcaagaaaaattcagtggatcaagcctatcattt 15053140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 10 - 356
Target Start/End: Original strand, 15066993 - 15067339
Alignment:
Q  10 tgaaggagagcatagaaagaccagataaggttttattcttgaaatatgaagaccttaaagaagatgttaattttaacatcaaaagaattgcagaatttgt 109  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  15066993 tgaaggagagcatagaaagaccagatagggttttattcttgaaatatgaagaccttaaagaagatgttaattttcacacgaaaagaattgcagaatttgt 15067092  T
Q  110 tggatttcctttcactgaagaagaggaaaataatggagtgattgaaaatataatcaagttatgcagctttgagagtatgaaagaaatagagggaaatcaa 209  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |   | |||| ||    
T  15067093 gggatttcctttcactgaagaagaggaaaataatggagtgattgaaaatataatcaagttatgcagctttgagagtatgaaggaatcaagtgaaaataaa 15067192  T
Q  210 tctggaactgtatcaggagacattgagaaagagttttactttcgaaagggagaaataggggattgggcaaattacctttcctcttcaatggtagagaaac 309  Q
    |||||||||| | ||  | | ||||||| |||||||| |||||||||||||||||||||||||||||  ||||| || ||| |||| ||| || | |||     
T  15067193 tctggaactgcagcactaaagattgagagagagtttttctttcgaaagggagaaataggggattgggtgaattatctctccccttcgatgataaaaaaat 15067292  T
Q  310 tttccaaagtcatagaagaaaaattaagtggatcaagtctatcattt 356  Q
    | ||||||||||| ||||||||||||||||||||||| |||||||||    
T  15067293 tatccaaagtcatggaagaaaaattaagtggatcaagcctatcattt 15067339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 371
Target Start/End: Original strand, 15029969 - 15030327
Alignment:
Q  10 tgaaggagagcatagaaagaccagataaggttttattcttgaaatatgaagaccttaaagaagatgttaattttaacatcaaaagaattgcagaatttgt 109  Q
    ||||||||||||||   |||||  ||||| |||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  15029969 tgaaggagagcataattagacctaataagattttattcttgaaatacgaagaccttaaagaagatgttagttttaacctcaaaagaattgcagaatttgt 15030068  T
Q  110 tggatttcctttcactgaagaagaggaaaataatggagtgattgaaaatataatcaagttatgcagctttgagagtatgaaagaaat-agagggaaatca 208  Q
     ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || | ||||||||||    
T  15030069 gggatttcctttcactcaagaagaggaaaataatgaagtgattgaaaatataatcaagttatgcagctttgagagtatg-aagagatcaaagggaaatca 15030167  T
Q  209 atctggaactgtatcaggagacattgagaaagagttttactttcgaaagggagaaataggggattgggcaaattacctttcctcttcaatggtagagaaa 308  Q
    ||||||||   ||  ||||| |||||| |||||||||| |||| |||||||||| || ||||||||||  ||||| || ||| |||||||| |||| |||    
T  15030168 atctggaa---taataggagtcattgataaagagtttttctttagaaagggagagatgggggattgggtgaattatctctccccttcaatgatagaaaaa 15030264  T
Q  309 ctttccaaagtcatagaagaaaaattaagtggatcaagtctatcattttaagtgtgcgcttaa 371  Q
     | |||||||||||| |||||||||||||||||| ||| ||||||||| ||| |||| |||||    
T  15030265 ttatccaaagtcataaaagaaaaattaagtggattaagcctatcatttaaagggtgcccttaa 15030327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 15047723 - 15047866
Alignment:
Q  22 tagaaagaccagataaggttttattcttgaaatatgaagaccttaaagaagatgttaattttaacatcaaaagaattgcagaatttgttggatttccttt 121  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||    
T  15047723 tagaaagaccacataaggttttattcttgaaatatgaagaccttaaagaagatgttaattttcacacgaaaagaattgcagaatttgtgggatttccttt 15047822  T
Q  122 cactgaagaagaggaaaataatggagtgattgaaaatataatca 165  Q
    |||| ||||||||||||||||||||||||||| |||||||||||    
T  15047823 cactcaagaagaggaaaataatggagtgattggaaatataatca 15047866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 15751416 - 15751585
Alignment:
Q  10 tgaaggagagcatagaaagaccagataaggttttattcttgaaatatgaagaccttaaagaagatgttaattttaacatcaaaagaattgcagaatttgt 109  Q
    |||| ||||||||||  |||||||| |||||||||||| ||||||||||||| ||||||||| |||  |||| | |  ||||||||||||||| | || |    
T  15751416 tgaacgagagcatagctagaccagacaaggttttattcatgaaatatgaagatcttaaagaaaatggaaattctcatgtcaaaagaattgcag-agttct 15751514  T
Q  110 tggatt-tcctttcactgaagaagaggaaaataatggagtgattgaaaatataatcaagttatgcagcttt 179  Q
    |||||| |||||||||| |||||||||||| |||||| |||||||| ||||| ||||| ||||| ||||||    
T  15751515 tggattgtcctttcactcaagaagaggaaagtaatggtgtgattgagaatattatcaatttatgtagcttt 15751585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 15000418 - 15000596
Alignment:
Q  12 aaggagagcatagaaagaccagataaggttttattcttgaaatatgaagaccttaaagaagatgttaattttaacatcaaaagaattgcagaatttgttg 111  Q
    |||||||||||||  |||||||  ||||||||||||||||| |||||||| |||||| ||||||  |||| | |  | |||||||||||||||||  | |    
T  15000418 aaggagagcatagctagaccaggcaaggttttattcttgaactatgaagaacttaaacaagatgccaattatcaagtgaaaagaattgcagaattcttgg 15000517  T
Q  112 gatttcctttcactgaagaagaggaaaataatggagtgattgaaaatataatcaagttatgcagctttgagagtatgaa 190  Q
    | | |||||| ||| |||||||||||| |||| || ||||| ||||||| || || |||||  ||||||| | ||||||    
T  15000518 gttgtccttttactcaagaagaggaaagtaatagaatgattcaaaatattattaatttatgttgctttgaaaatatgaa 15000596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 341
Target Start/End: Complemental strand, 4506224 - 4506131
Alignment:
Q  248 ctttcgaaagggagaaataggggattgggcaaattacctttcctcttcaatggtagagaaactttccaaagtcatagaagaaaaattaagtgga 341  Q
    |||| |||||| |||| |||| ||||||  |||||| |||||  ||| ||||| ||| ||||| |||||| ||||||||||||| |||||||||    
T  4506224 ctttagaaaggcagaagtaggagattggataaattatctttctccttgaatggaagaaaaactatccaaaatcatagaagaaaagttaagtgga 4506131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 356
Target Start/End: Original strand, 15047925 - 15047960
Alignment:
Q  321 atagaagaaaaattaagtggatcaagtctatcattt 356  Q
    |||||||||||||||||||||||||| |||||||||    
T  15047925 atagaagaaaaattaagtggatcaagcctatcattt 15047960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 272
Target Start/End: Original strand, 15047886 - 15047919
Alignment:
Q  239 agagttttactttcgaaagggagaaataggggat 272  Q
    |||||||| |||||||||||||||||||||||||    
T  15047886 agagtttttctttcgaaagggagaaataggggat 15047919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 1618086 - 1617753
Alignment:
Q  10 tgaaggagagcatagaaagaccagataaggttttattcttgaaatatgaagaccttaaagaagatgttaattttaacatcaaaagaattgcagaatttgt 109  Q
    |||||||||||||||  |||||| | ||| ||||||||||| |||||||||| |||||||||||| | |||||| |  | |||||||||||||| ||| |    
T  1618086 tgaaggagagcatagctagaccaaacaagattttattcttgcaatatgaagatcttaaagaagatataaattttcatgtgaaaagaattgcagagttttt 1617987  T
Q  110 tggatttcctttcactgaagaagaggaaaataatggagtgattgaaaatataatcaagttatgcagctttgagagtatgaaagaaatagagggaaatcaa 209  Q
     || | |||||| ||| |||| ||||||| |||||| |||||||||||||| ||||| ||||| |||||||| |   |||||||| | || | |||| ||    
T  1617986 gggttgtccttttactcaagaggaggaaagtaatggtgtgattgaaaatattatcaatttatgtagctttgaaacattgaaagaattggatgcaaataaa 1617887  T
Q  210 tctggaactgtatcaggagacattgagaaagagttttactttcgaaagggagaaataggggattgggcaaattacctttcctcttcaatggtagagaaac 309  Q
      ||||  | ||  | |    ||||||||| |||  ||||||||||||| ||||||||||||||||   ||||| |||||  |||||||||||||||| |    
T  1617886 agtggaggtttaggatggattattgagaaaaagtactactttcgaaaggcagaaataggggattggattaattatctttctccttcaatggtagagaagc 1617787  T
Q  310 tttccaaagtcatagaagaaaaattaagtggatc 343  Q
    | |||||| |||||||||||||||||||||||||    
T  1617786 tgtccaaaatcatagaagaaaaattaagtggatc 1617753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 1626636 - 1626303
Alignment:
Q  10 tgaaggagagcatagaaagaccagataaggttttattcttgaaatatgaagaccttaaagaagatgttaattttaacatcaaaagaattgcagaatttgt 109  Q
    |||||||||||| ||  |||||| | ||| |||||||||||||||||||||| |||||||||||| | |||||| |  | |||||||||||||| ||| |    
T  1626636 tgaaggagagcaaagctagaccaaacaagattttattcttgaaatatgaagatcttaaagaagatataaattttcatgttaaaagaattgcagagttttt 1626537  T
Q  110 tggatttcctttcactgaagaagaggaaaataatggagtgattgaaaatataatcaagttatgcagctttgagagtatgaaagaaatagagggaaatcaa 209  Q
     || | |||||| ||| |||| || |||| |||||| |||||||||||||||||||| ||||| |||||||| |  ||||||| | | || | |||| ||    
T  1626536 gggttgtccttttactcaagaggaagaaagtaatggtgtgattgaaaatataatcaatttatgtagctttgaaaagatgaaaggattggaagcaaataaa 1626437  T
Q  210 tctggaactgtatcaggagacat---tgagaaagagttttactttcgaaagggagaaataggggattgggcaaattacctttcctcttcaatggtagaga 306  Q
    ||||||   || |  ||| | ||   ||| ||| |||  | ||||||||||||||||||||||||||||   ||||| |||||  ||||||||||||| |    
T  1626436 tctgga---gtcttgggaaagatttatgacaaaaagtacttctttcgaaagggagaaataggggattggattaattatctttctccttcaatggtagata 1626340  T
Q  307 aactttccaaagtcatagaagaaaaattaagtggatc 343  Q
    |  | |||||| |||||||||||||||||||||||||    
T  1626339 agttatccaaaatcatagaagaaaaattaagtggatc 1626303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 1631321 - 1631265
Alignment:
Q  286 tttcctcttcaatggtagagaaactttccaaagtcatagaagaaaaattaagtggat 342  Q
    |||| |||||||||||||| ||  | |||||| ||||||||||||||||||||||||    
T  1631321 tttcttcttcaatggtagaaaagttatccaaaatcatagaagaaaaattaagtggat 1631265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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