View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12765_low_9 (Length: 463)

Name: NF12765_low_9
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12765_low_9
NF12765_low_9
[»] chr6 (6 HSPs)
chr6 (71-276)||(34848016-34848221)
chr6 (325-453)||(34847839-34847967)
chr6 (84-132)||(29892972-29893020)
chr6 (87-134)||(6708103-6708150)
chr6 (87-134)||(31079621-31079668)
chr6 (78-134)||(8356958-8357014)
[»] chr2 (5 HSPs)
chr2 (87-134)||(6124182-6124229)
chr2 (78-132)||(43214572-43214626)
chr2 (78-134)||(2319275-2319331)
chr2 (78-134)||(6497711-6497767)
chr2 (78-134)||(35342317-35342373)
[»] chr7 (3 HSPs)
chr7 (87-133)||(27398110-27398156)
chr7 (74-127)||(49015135-49015188)
chr7 (78-134)||(11058349-11058405)
[»] chr5 (5 HSPs)
chr5 (87-132)||(9792328-9792373)
chr5 (78-134)||(41392774-41392830)
chr5 (87-134)||(1639844-1639891)
chr5 (87-116)||(11694228-11694257)
chr5 (95-132)||(32624894-32624931)
[»] chr1 (6 HSPs)
chr1 (78-134)||(36367754-36367810)
chr1 (87-134)||(3426857-3426904)
chr1 (95-134)||(9528901-9528940)
chr1 (87-134)||(38948741-38948788)
chr1 (95-132)||(9092547-9092584)
chr1 (86-134)||(28659362-28659410)
[»] scaffold0112 (1 HSPs)
scaffold0112 (87-134)||(42127-42174)
[»] chr8 (3 HSPs)
chr8 (87-134)||(28876628-28876675)
chr8 (78-134)||(37668582-37668638)
chr8 (78-134)||(43771766-43771822)
[»] chr4 (8 HSPs)
chr4 (87-134)||(5325783-5325830)
chr4 (87-134)||(38492321-38492368)
chr4 (87-134)||(52122931-52122978)
chr4 (88-133)||(3403638-3403683)
chr4 (87-132)||(41145621-41145666)
chr4 (87-127)||(2586345-2586385)
chr4 (78-134)||(42472631-42472687)
chr4 (78-134)||(55901201-55901257)
[»] chr3 (2 HSPs)
chr3 (87-134)||(37996873-37996920)
chr3 (87-134)||(47642026-47642073)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 71 - 276
Target Start/End: Complemental strand, 34848221 - 34848016
Alignment:
Q  71 ctttctttgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacctgatgtcttgataaaatttgaatctaaattaaaaat 170  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||  ||||||||| |||| | |||||||||||||||||||||||||||||||||||    
T  34848221 ctttctttgaaatccatatactttaaaatggatgacgcactgtatcttatgtgtatcctgcatccgatgtcttgataaaatttgaatctaaattaaaaat 34848122  T
Q  171 tcacaaatatattagaatatatgtaccttttttcctttcttgtgtacgaactatgagaccatctgaaagataaccaatagaggctctatcatcaatggtt 270  Q
    | |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34848121 ttacaaatgtattacaatatatgtaccttttttcctttcttgtgtacgaactatgagaccatctgaaagataaccaatagaggctctatcatcaatggtt 34848022  T
Q  271 aatctt 276  Q
    ||||||    
T  34848021 aatctt 34848016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 325 - 453
Target Start/End: Complemental strand, 34847967 - 34847839
Alignment:
Q  325 tccatgctaaaactctttttcatggacacacaagaagaagataaatcaagttgaacaccaaaaagtctaactccaacaaaactactacttcctcttaatg 424  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34847967 tccatgctaaaactctttttcatggaaacacaagaagaagataaatcaagttgaacaccaaaaagtctaactccaacaaaactaccacttcctcttaatg 34847868  T
Q  425 aattacatgtccttgaattatgacctatg 453  Q
    ||||||| |||||||||||||||||||||    
T  34847867 aattacaagtccttgaattatgacctatg 34847839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 29892972 - 29893020
Alignment:
Q  84 ccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgca 132  Q
    |||||||||||||||||||||| |||||||||||| || ||||| ||||    
T  29892972 ccagatactttaaaatggatgatgtactgtatcccctgcgtatcctgca 29893020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 6708150 - 6708103
Alignment:
Q  87 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    |||||||||||||||||||| || |||||||| |||||||| ||||||    
T  6708150 gatactttaaaatggatgacatattgtatcccctgtgtatcatgcacc 6708103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 31079621 - 31079668
Alignment:
Q  87 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    ||||||||||||||||||||||| |||||||| || ||||| ||||||    
T  31079621 gatactttaaaatggatgacgtattgtatcccctgcgtatcctgcacc 31079668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 8356958 - 8357014
Alignment:
Q  78 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    |||| ||| ||||||| |||||||||||||||| ||||||| || ||||| ||||||    
T  8356958 tgaagtcctgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 8357014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 6124182 - 6124229
Alignment:
Q  87 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    ||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  6124182 gatactttaaaatggatgacgtattgtatcccctgtgtatcctgcacc 6124229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 43214572 - 43214626
Alignment:
Q  78 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgca 132  Q
    |||| ||||||||||| |||||||||||||||  |||||||||||||||| ||||    
T  43214572 tgaagtccagatacttcaaaatggatgacgtatcgtatcccatgtgtatcctgca 43214626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 2319275 - 2319331
Alignment:
Q  78 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    ||||| || ||||||| |||||||||||||||  ||||||| || ||||||||||||    
T  2319275 tgaaaccccgatacttcaaaatggatgacgtatcgtatcccctgcgtatcttgcacc 2319331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 6497767 - 6497711
Alignment:
Q  78 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    |||| ||| ||||||| |||||||||||||||| ||||||| || ||||| ||||||    
T  6497767 tgaagtcccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 6497711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 35342317 - 35342373
Alignment:
Q  78 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    |||| ||| ||||||| |||||||||||||||| ||||||| || ||||| ||||||    
T  35342317 tgaagtcccgatacttcaaaatggatgacgtaccgtatcccttgcgtatcctgcacc 35342373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 27398156 - 27398110
Alignment:
Q  87 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcac 133  Q
    |||||||||||||||||||||||||||||||| || ||||| |||||    
T  27398156 gatactttaaaatggatgacgtactgtatcccctgcgtatcctgcac 27398110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 49015188 - 49015135
Alignment:
Q  74 tctttgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatc 127  Q
    ||||||||||| |||||||| |||||||||||| ||| ||||| ||||||||||    
T  49015188 tctttgaaatctagatacttcaaaatggatgacataccgtatctcatgtgtatc 49015135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 11058349 - 11058405
Alignment:
Q  78 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    |||| ||||| ||||| |||||||||||||||| ||||||| || ||||| ||||||    
T  11058349 tgaagtccaggtacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 11058405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 9792328 - 9792373
Alignment:
Q  87 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgca 132  Q
    |||||||||||||||||||||||| ||||||| |||||||| ||||    
T  9792328 gatactttaaaatggatgacgtaccgtatcccctgtgtatcctgca 9792373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 41392830 - 41392774
Alignment:
Q  78 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    |||| ||||||||||| |||||||||||||||| ||||||| || ||||| ||||||    
T  41392830 tgaagtccagatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 41392774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 1639891 - 1639844
Alignment:
Q  87 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  1639891 gatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 1639844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 116
Target Start/End: Original strand, 11694228 - 11694257
Alignment:
Q  87 gatactttaaaatggatgacgtactgtatc 116  Q
    ||||||||||||||||||||||||||||||    
T  11694228 gatactttaaaatggatgacgtactgtatc 11694257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 32624894 - 32624931
Alignment:
Q  95 aaaatggatgacgtactgtatcccatgtgtatcttgca 132  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  32624894 aaaatggatgacgtaccgtatcccctgtgtatcttgca 32624931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 36367810 - 36367754
Alignment:
Q  78 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    |||| ||| ||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  36367810 tgaagtcctgatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 36367754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 3426857 - 3426904
Alignment:
Q  87 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    ||||||||||||||||||||||| |||||||| || ||||| ||||||    
T  3426857 gatactttaaaatggatgacgtattgtatcccctgcgtatcctgcacc 3426904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 134
Target Start/End: Complemental strand, 9528940 - 9528901
Alignment:
Q  95 aaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  9528940 aaaatggatgacgtattgtatcccttgtgtatcttgcacc 9528901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 38948741 - 38948788
Alignment:
Q  87 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    |||||||||||||||||||||||| ||||||| || ||||| ||||||    
T  38948741 gatactttaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 38948788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 9092584 - 9092547
Alignment:
Q  95 aaaatggatgacgtactgtatcccatgtgtatcttgca 132  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  9092584 aaaatggatgacgtactgtatcctatgtgtatcctgca 9092547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 28659410 - 28659362
Alignment:
Q  86 agatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    ||||||||||||||||||||||||| |||| || || ||||| ||||||    
T  28659410 agatactttaaaatggatgacgtacggtattccctgcgtatcatgcacc 28659362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 42174 - 42127
Alignment:
Q  87 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  42174 gatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 42127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 28876675 - 28876628
Alignment:
Q  87 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  28876675 gatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 28876628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 37668582 - 37668638
Alignment:
Q  78 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    ||||| || ||||||| |||||||||||||||| |||| || || ||||||||||||    
T  37668582 tgaaaccccgatacttcaaaatggatgacgtaccgtattccctgcgtatcttgcacc 37668638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 43771822 - 43771766
Alignment:
Q  78 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    ||||| || ||||||| |||||||||||||||| ||||||| || ||||| ||||||    
T  43771822 tgaaaccccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 43771766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 5325830 - 5325783
Alignment:
Q  87 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    ||||||||||||||||||||||| |||||||| || ||||| ||||||    
T  5325830 gatactttaaaatggatgacgtattgtatcccctgcgtatcctgcacc 5325783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 38492368 - 38492321
Alignment:
Q  87 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  38492368 gatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 38492321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 52122978 - 52122931
Alignment:
Q  87 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  52122978 gatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 52122931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 3403683 - 3403638
Alignment:
Q  88 atactttaaaatggatgacgtactgtatcccatgtgtatcttgcac 133  Q
    |||||| |||||||||||||||| ||||||| |||||||| |||||    
T  3403683 atacttcaaaatggatgacgtaccgtatcccctgtgtatcctgcac 3403638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 41145621 - 41145666
Alignment:
Q  87 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgca 132  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||    
T  41145621 gatacttcaaaatggatgacgtactgtatcccctgcgtatcctgca 41145666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 2586345 - 2586385
Alignment:
Q  87 gatactttaaaatggatgacgtactgtatcccatgtgtatc 127  Q
    |||||||||||||||||||||||| ||||||| || |||||    
T  2586345 gatactttaaaatggatgacgtaccgtatcccctgagtatc 2586385  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 42472687 - 42472631
Alignment:
Q  78 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    |||| ||| ||||||| ||||||||||||||||||||| || || ||||| ||||||    
T  42472687 tgaagtcccgatacttcaaaatggatgacgtactgtattccctgcgtatcctgcacc 42472631  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 55901257 - 55901201
Alignment:
Q  78 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    ||||| || ||||||||||||| |||||||||  ||||||| |||||||| ||||||    
T  55901257 tgaaaccccgatactttaaaatagatgacgtatcgtatcccctgtgtatcctgcacc 55901201  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 37996920 - 37996873
Alignment:
Q  87 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    |||||||||||||||||||||||| ||||||| || ||||| ||||||    
T  37996920 gatactttaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 37996873  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 47642026 - 47642073
Alignment:
Q  87 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 134  Q
    ||||||| |||||||||||||||| |||||||||| ||||| ||||||    
T  47642026 gatacttcaaaatggatgacgtaccgtatcccatgcgtatcctgcacc 47642073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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