View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12766_high_1 (Length: 818)

Name: NF12766_high_1
Description: NF12766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12766_high_1
NF12766_high_1
[»] chr4 (1 HSPs)
chr4 (16-805)||(40415488-40416279)


Alignment Details
Target: chr4 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 16 - 805
Target Start/End: Original strand, 40415488 - 40416279
Alignment:
Q  16 gtaacatgtgtgtcatagtcgtctcggtgttagacattgacaacaaatttaacctgaaatgtcagtgctacttggatataaactgttgccccacgtacca 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||     
T  40415488 gtaacatgtgtgtcacagtcgtctcggtgttagacattgacaacaaatttaacctgaaatgtcagtgttacttgggtataaactgttgccccacgtacct 40415587  T
Q  116 tagtgagtatggagtcatcaattttggaggcacgctgcctccaaatagagctgtttcttgtgccatcttcaacagaacgtgtctcaaaatttctcctaaa 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40415588 tagtgagtatggagtcatcaattttggaggcacgctgcctccaaatagggctgtttcttgtgccatcttcaacagaacgtgtctcacaatttctcctaaa 40415687  T
Q  216 tacattcctgaaataagcttttcaaaaatctaagagaaaagggaaggnnnnnnnnn--ttcagggatcaattctagatatcaagataaattatcaatatt 313  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||           |||||||||||||||||||||||||||||||||||||||| |    
T  40415688 tacattcctgaaataagcttttcaaaaatctaagagaaaaaggaaggaaaaaaaaaaattcagggatcaattctagatatcaagataaattatcaatagt 40415787  T
Q  314 gaatttagtttataatataccccacttccaggatttgagctttcagcatctaaaatagtgtcaaacgatgttagaggaacatgagaggaattgaagtttc 413  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40415788 gaatttagtttataatataccccacttccagaatttgagctttcagcatctaaaatagtgtcaaacgatgttagaggaacatgagaggaattgaagtttc 40415887  T
Q  414 cccactccatgctaattacctgcaacattatatcatgaaatttaagattttatataaaagaatgagaccatcaaagatagttgggatgaattgttccaga 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40415888 cccactccatgctaattacctgcaacattatatcatgaaatttaagattttatataaaaaaatgagaccatcaaagatagttgggatgaattgttccaga 40415987  T
Q  514 gaaattaagttcgaattctggttgaaacaatcttaattaaactttatttacctcccgagttctatattcactaaaatcccattccccttaaaaccggatg 613  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  40415988 gaaattaagtttgaattctggttgaaacaatcttaattaaactttatttacctcccgaattctatattcactaaaatcccattcccctgaaaaccggatg 40416087  T
Q  614 gtttagataagtggttcttttgttctcgnnnnnnnnnnnnnnnnnnnnnnngcgtaaaaaacaatgtaaagactatggcagtcactaacaagttcatttg 713  Q
    ||||||||||||||||||||||||||||                       |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40416088 gtttagataagtggttcttttgttctcgttttttgatatattttttcttttgcgtaaaaaacaatgtaaagactatggcagtcactaaccagttcatttg 40416187  T
Q  714 aattgggagatcgtgcaagctcactttcttgtgctggttcaacataagcagcatttgtgctcataccaagagttattgaagccacattgtct 805  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40416188 aattgggagatcgtgcaagctcactttcttgtgctggttcaacataagcagcatttgtgctcataccaagagttattgcagccacattgtct 40416279  T

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