View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12766_high_4 (Length: 415)
Name: NF12766_high_4
Description: NF12766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12766_high_4 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 117 - 415
Target Start/End: Complemental strand, 28927173 - 28926881
Alignment:
| Q |
117 |
ctttgctctctcattttaaatggatgctctatagaatgtgttatgataaatactcatacaatgttccctggaaatttctggttgtttatttcaatgcttg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28927173 |
ctttgctctctcattttaaatggatgctctatagaatgtgttatgataaatactcatacaatgttccctggaaatttctggttgtttatttcaatgcttg |
28927074 |
T |
|
| Q |
217 |
caatctggtctgtgacacaattgtaagtagtattgttttatttgatttcattcccatgtagtatcccttattggtttgattgaaggttgattctatatcg |
316 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28927073 |
cgatctggtctgtgacacaattgtaagta---ttgttttatttgatttcattcccatgta---tcccttattggtttgattggaggttgattctatatcg |
28926980 |
T |
|
| Q |
317 |
aactcctttgcattttttcccttacacctgttgttgaataaaacgttaagttcatgagttctggaatagtctttcgttcatttcttgctttcggttttc |
415 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28926979 |
aactcatttgcattttttcccttacacctgttgttgaataaaacgttaagttgatgagttctggaatagtctttcgttcatttcttgctttcggttttc |
28926881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 48745368 - 48745315
Alignment:
| Q |
9 |
atcatcaatatttacagaatttacaaggcaacaacctaaa-cccaccaaaaaca |
61 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
48745368 |
atcagcaatatttacagaatttacaaggaaacaacctaaaccccaccaaaaaca |
48745315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 23050233 - 23050200
Alignment:
| Q |
84 |
ttagccaatgcctaggatagtaaacggactaagc |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
23050233 |
ttagccaatgcctaggatagtaaatggactaagc |
23050200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 35516810 - 35516777
Alignment:
| Q |
84 |
ttagccaatgcctaggatagtaaacggactaagc |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
35516810 |
ttagccaatgcctaggatagtaaatggactaagc |
35516777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University