View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12766_high_8 (Length: 277)
Name: NF12766_high_8
Description: NF12766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12766_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 25793111 - 25792845
Alignment:
| Q |
1 |
caagaatgtgccctcagaatttgagcatgtggaaaaaggggatgcattacatggtgagtttgtttgctgatttgatcactgtctcacacattatagtttt |
100 |
Q |
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| T |
25793111 |
caagaatgtgccctcagaatttgagcatgtggaaaaaggggatgcattacatggtgagtttgtttactgatttgatcactgtctcacacattatagtttt |
25793012 |
T |
|
| Q |
101 |
ggagcttttcattatggtttacactaatctattattatgctgatttttgcttttcctctattccttttgtttaagcaatggaactagctctgtctttgga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
25793011 |
ggagcttttcattatggtttacactaatctattattatgctgatttttgcttttcctctattccttttgtttaagcaatggaattagctttgtctttgga |
25792912 |
T |
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| Q |
201 |
gaagttaacaaatgaaaaacttctgaatgtgcatagtgtaatgcctctttgtccctttagctctgtg |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25792911 |
gaagttaacaaatgaaaaacttctgaatgtgcatagtgtaatgcctctttgtccctttagctctgtg |
25792845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 4112529 - 4112601
Alignment:
| Q |
178 |
atggaactagctctgtctttggagaagttaacaaatgaaaaacttctgaatgtgcatagtgtaatgcctcttt |
250 |
Q |
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|||||| | ||||||||||||||||||||| |||||| |||||||||||||| || |||||||||||||||| |
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| T |
4112529 |
atggaattggctctgtctttggagaagttagtaaatgagaaacttctgaatgttcacagtgtaatgcctcttt |
4112601 |
T |
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