View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12766_low_6 (Length: 349)
Name: NF12766_low_6
Description: NF12766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12766_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 32083524 - 32083836
Alignment:
| Q |
18 |
caaaataggaataaaatcaccataattatactcaaaactttgagccaaacgactcctttcaccattcaaagctttcaacttgacaaataaaggatcctct |
117 |
Q |
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| T |
32083524 |
caaaataggaataaaatcaccataattatactcaaaactttgagccaaacgactcctttcaccattcaaagctttcaacttgacaaataaaggatcctct |
32083623 |
T |
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| Q |
118 |
tcactttcaaatcttctatcaaacataatcctatacataatattatacatcatcaactgcaacctcttccttataacaatcccaccaatactcgcttcgg |
217 |
Q |
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| T |
32083624 |
tcactttcaaatcttctatcaaacataatcctatacataatattatacatcatcaactgcaacctcttccttataacaatcccaccaatacttgcttcgg |
32083723 |
T |
|
| Q |
218 |
cgttgttcttaacatcgttaacaacactctcagcttcagactcccacccgtaacgatactgttgaacaaccttgtttgtaaaaaacggaactgtcatgat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32083724 |
cgttgttcttaacatcgttaacaacactctcagcttcagactcccacccgtaacgatactgttgaacaaccttgtttgtaaaaaacggaactgtcatgat |
32083823 |
T |
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| Q |
318 |
tctgcgcatttta |
330 |
Q |
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||||||||||||| |
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| T |
32083824 |
tctgcgcatttta |
32083836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 50240685 - 50240644
Alignment:
| Q |
135 |
atcaaacataatcctatacataatattatacatcatcaactg |
176 |
Q |
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| T |
50240685 |
atcaaacatcatcctatacatgatattatacagcatcaactg |
50240644 |
T |
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