View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12767_high_11 (Length: 486)

Name: NF12767_high_11
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12767_high_11
NF12767_high_11
[»] chr4 (8 HSPs)
chr4 (14-467)||(25180172-25180629)
chr4 (23-467)||(25252309-25252753)
chr4 (23-467)||(25168513-25168961)
chr4 (37-324)||(25159966-25160253)
chr4 (234-308)||(25000779-25000853)
chr4 (417-467)||(25160351-25160401)
chr4 (234-317)||(24986310-24986393)
chr4 (240-324)||(25038736-25038820)
[»] chr3 (2 HSPs)
chr3 (67-324)||(9213692-9213949)
chr3 (405-467)||(9213419-9213481)
[»] chr6 (2 HSPs)
chr6 (237-320)||(29422946-29423029)
chr6 (236-317)||(29460043-29460124)
[»] chr2 (4 HSPs)
chr2 (239-324)||(42167210-42167295)
chr2 (414-467)||(42157004-42157057)
chr2 (239-323)||(42290572-42290656)
chr2 (239-323)||(42156723-42156807)
[»] chr5 (1 HSPs)
chr5 (67-164)||(30361048-30361145)


Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 14 - 467
Target Start/End: Original strand, 25180172 - 25180629
Alignment:
Q  14 gcacagaccagttaatgatcaatgttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaag 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25180172 gcacagaccagttaatgatcaatgttatacctatcacacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaag 25180271  T
Q  114 ttgataatgtgcaactaaataaggttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccattt 213  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  25180272 ttgataatgtgcaactaaataaggttcggttccagaatctccaccggtgcaatttggattaaaccaagaagaacatcgacctggtgccattgcgccattt 25180371  T
Q  214 gcatatccattttgactgtaactccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25180372 gcatatccattttgactgtaactccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaa 25180471  T
Q  314 aatcttttctgtagtttaaagtatgtaaagatgaatgagaaacatattcataaccatttaaaccaatt----aaatgaaaatttgaaattgtgtcactca 409  Q
    ||||||||||||||||  | ||||| ||||||||||||||||||| |||||||| ||  |||  || |    | |||||| |||||||||||||||||||    
T  25180472 aatcttttctgtagttggaggtatgaaaagatgaatgagaaacattttcataactatagaaaataagtttccagatgaaattttgaaattgtgtcactca 25180571  T
Q  410 catgatgagaggacttaagaagccgccatattcatcttctagagtttgaggaagatcc 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25180572 catgatgagaggacttaagaagccgccatattcatcttctagagtttgaggaagatcc 25180629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 23 - 467
Target Start/End: Complemental strand, 25252753 - 25252309
Alignment:
Q  23 agttaatgatcaatgttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatg 122  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||||||||||    
T  25252753 agttaataaccaatgttatacctatcacacccttttgagagacttgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatg 25252654  T
Q  123 tgcaactaaataaggttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatcca 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| | ||||||||||| |||    
T  25252653 tgcaactaaataaggttctgttccagaatcaccgccggtgcaatttggattcaaccaagaagagcatcgtcctggtgccatttcaccatttgcataccca 25252554  T
Q  223 ttttgactgtaactccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttc 322  Q
    | |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  25252553 tcttgactgtaagtccatggttcattcaaagttatccaatgttttactctatctccaaatgttttgaagcaaagttccgcatagtcttgaaagtcttttc 25252454  T
Q  323 tgtagtttaaagtatgtaaagatgaatgagaaacatattcataaccatttaaaccaattaaatgaaaatttgaaattgtgtcactcacatgatgagagga 422  Q
    ||||||| ||  ||| ||| |||||||||||||| | |||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  25252453 tgtagttgaagatatataatgatgaatgagaaactttttcataactatttaaactaattaagtgaaaatttgaaattgtatcactcacatgatgagagga 25252354  T
Q  423 cttaagaagccgccatattcatcttctagagtttgaggaagatcc 467  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  25252353 cttaagaatccgccatattcatcttctagagtttgaggaagatcc 25252309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 23 - 467
Target Start/End: Original strand, 25168513 - 25168961
Alignment:
Q  23 agttaatgatcaatgttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatg 122  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||||||||||    
T  25168513 agttaataaccaatgttatacctatcacacccttttgagagacttgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatg 25168612  T
Q  123 tgcaactaaataaggttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatcca 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| | ||||||||||| |||    
T  25168613 tgcaactaaataaggttcagttccagaatcaccgccggtgcaatttggattcaaccaagaagagcatcgaccaggtgccatttcaccatttgcataccca 25168712  T
Q  223 ttttgactgtaactccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttc 322  Q
    | |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  25168713 tcttgactgtaagtccatggttcattcaaagttatccaatgttttactctatctccaaatgttttgaagcaaagttccgcatagtcttgaaagtcttttc 25168812  T
Q  323 tgta----gtttaaagtatgtaaagatgaatgagaaacatattcataaccatttaaaccaattaaatgaaaatttgaaattgtgtcactcacatgatgag 418  Q
    ||||    ||| ||  ||| ||| |||||||||||||| | |||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  25168813 tgtacgtagttgaagatatataatgatgaatgagaaactttttcataactatttaaactaattaagtgaaaatttgaaattgtatcactcacatgatgag 25168912  T
Q  419 aggacttaagaagccgccatattcatcttctagagtttgaggaagatcc 467  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25168913 aggacttaagaaaccgccatattcatcttctagagtttgaggaagatcc 25168961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 37 - 324
Target Start/End: Original strand, 25159966 - 25160253
Alignment:
Q  37 gttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataag 136  Q
    ||||| ||||| | ||||||||||||  ||| ||| ||  |||||||||||| ||| ||||| ||||| || |||||||| |||||||  || ||||| |    
T  25159966 gttatgcctattacacccttttgagattctttatactttttcttgtacacatcaacggctgcggcatgtgcaagaagttggtaatgtgttaccaaatagg 25160065  T
Q  137 gttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatccattttgactgtaact 236  Q
    | ||| |  ||||||||||||| || ||||| ||||| ||||||   ||||| ||||| |||||||||   ||||||||||| |||||||| || || ||    
T  25160066 gctcgatcgcagaatcaccgccagtacaatttggattcaaccaactggagcaacgacccggtgccattcgcccatttgcatagccattttggctatagct 25160165  T
Q  237 ccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttctg 324  Q
    ||||||||| |||||||| | |||||  || |||||||| ||||||   || || |||||||||||||||||||||||||||||||||    
T  25160166 ccatggctcgttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatcttttctg 25160253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 25000853 - 25000779
Alignment:
Q  234 actccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtc 308  Q
    ||||||||| ||||||||||| ||||||||||| || ||||| ||||||   || ||||||||||| ||||||||    
T  25000853 actccatggttcattcaaagtaatccaatgtttcaccctatcgccaaattccttgaagcaaagttcagcatagtc 25000779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 467
Target Start/End: Original strand, 25160351 - 25160401
Alignment:
Q  417 agaggacttaagaagccgccatattcatcttctagagtttgaggaagatcc 467  Q
    ||||||||||||||||| ||||| || ||||||| ||||||||||||||||    
T  25160351 agaggacttaagaagccaccatactcttcttctaaagtttgaggaagatcc 25160401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 317
Target Start/End: Original strand, 24986310 - 24986393
Alignment:
Q  234 actccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatc 317  Q
    ||||||||| ||||||||||| ||||||||||| || ||||| ||||||   ||  |||||||||| |||||||| | ||||||    
T  24986310 actccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatc 24986393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 324
Target Start/End: Original strand, 25038736 - 25038820
Alignment:
Q  240 tggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttctg 324  Q
    ||||||||| || || |||||||| || ||||||||||| |||   || ||||| || || ||||||||||||||||| ||||||    
T  25038736 tggctcattgaaggtaatccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttctg 25038820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 67 - 324
Target Start/End: Complemental strand, 9213949 - 9213692
Alignment:
Q  67 tgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataaggttcggttccagaatcaccgccggtgcaat 166  Q
    ||||| || |||||||||||||| |||||| | ||||||||||||||||| || ||||  |||| ||| || ||  |  |||||||||| ||||||||||    
T  9213949 tgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgcaat 9213850  T
Q  167 tgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatccattttgactgtaactccatggctcattcaaagttatccaatgttt 266  Q
    | ||||| ||||||  ||| || |||||||||||||||   ||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||| |||    
T  9213849 ttggattcaaccaactagaacaacgacctggtgccattcgtccatttgcatagccattttgactgtaactccatggttcattcaaagtaacccaatattt 9213750  T
Q  267 tactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttctg 324  Q
     || ||||| |||||    |||||||||||||| ||||||||||| ||||||||||||    
T  9213749 caccctatcaccaaactccttaaagcaaagttcagcatagtcttggaaatcttttctg 9213692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 467
Target Start/End: Complemental strand, 9213481 - 9213419
Alignment:
Q  405 actcacatgatgagaggacttaagaagccgccatattcatcttctagagtttgaggaagatcc 467  Q
    |||||||  |||||||| ||||||||||| ||||| ||||||||||||||||| || ||||||    
T  9213481 actcacactatgagagggcttaagaagccaccatactcatcttctagagtttgtgggagatcc 9213419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 320
Target Start/End: Complemental strand, 29423029 - 29422946
Alignment:
Q  237 ccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttt 320  Q
    |||||| |||||||  || ||||||||||||||||| || || |||  |||||||||||| |||||||||||| ||||||||||    
T  29423029 ccatggttcattcagtgtgatccaatgttttactctgtccccgaattctttaaagcaaagctccgcatagtctcgaaaatcttt 29422946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 29460043 - 29460124
Alignment:
Q  236 tccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatc 317  Q
    ||||||| |||||||| || |||||||| ||||| ||||||||||||  |||||| ||||| ||  ||||||||||||||||    
T  29460043 tccatggttcattcaatgtgatccaatgctttaccctatctccaaattctttaaaacaaagctctacatagtcttgaaaatc 29460124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 324
Target Start/End: Original strand, 42167210 - 42167295
Alignment:
Q  239 atggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttctg 324  Q
    |||||||||| ||||| |||||||  || || |||||||||||   ||| || |||||||||||||||||||||||||| ||||||    
T  42167210 atggctcattgaaagtaatccaatacttcaccctatctccaaactctttgaaacaaagttccgcatagtcttgaaaatcatttctg 42167295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 467
Target Start/End: Original strand, 42157004 - 42157057
Alignment:
Q  414 atgagaggacttaagaagccgccatattcatcttctagagtttgaggaagatcc 467  Q
    |||||||| ||||||||||||||||| || || |||| ||||||||||||||||    
T  42157004 atgagagggcttaagaagccgccatactcgtcctctaaagtttgaggaagatcc 42157057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 42290656 - 42290572
Alignment:
Q  239 atggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttct 323  Q
    |||||||||| ||||| |||||||  || || |||||||||||   ||| || ||||||||||| |||||||||||||| |||||    
T  42290656 atggctcattgaaagtgatccaatacttcaccctatctccaaactctttgaaacaaagttccgcgtagtcttgaaaatcatttct 42290572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 42156723 - 42156807
Alignment:
Q  239 atggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttct 323  Q
    |||||||||| |||||  ||||||  || || |||||||||||   ||| || |||||||||||||| ||||||||||| |||||    
T  42156723 atggctcattgaaagtggtccaatacttcaccctatctccaaactctttgaaacaaagttccgcataatcttgaaaatcatttct 42156807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 164
Target Start/End: Complemental strand, 30361145 - 30361048
Alignment:
Q  67 tgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataaggttcggttccagaatcaccgccggtgca 164  Q
    |||||||| |||||||| || | |||||| ||||||||||| || ||| | | ||||||||||||||| || || || || |||||||| ||||||||    
T  30361145 tgatattttgtcttgtaaacttgaacagcggctgcatgagcaaggagtaggtgatgtgcaactaaatatggctctgtccccgaatcaccaccggtgca 30361048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University