View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12767_high_18 (Length: 395)
Name: NF12767_high_18
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 40001493 - 40001864
Alignment:
| Q |
1 |
gtgggactgagcacatggagtcccatatgcccaacacaacaaaatctctctatacaatcccaatgacccaatccgccgattggtttccttcttggaaaca |
100 |
Q |
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| T |
40001493 |
gtgggactgagcacatggagtcccatatgcccaacacaacaaaatctctctatacaatcccaatgacccaatccgccgattggtttccttcttggaaaca |
40001592 |
T |
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| Q |
101 |
ccaccaccttccttctctgattatccaccacactcttcaagggccaccatcactaaatgtaggagatcaaagctgctcattccaatctctaggaaatttg |
200 |
Q |
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| T |
40001593 |
ccaccaccttccttctctgattatccaccacactcttcaagggccaccatcactaaatgtgggagatcaaagctgctcattccaatctctagcaaatttg |
40001692 |
T |
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| Q |
201 |
tttagtggagtagcaatgacaaacatcattatgttgttaatgtttgcactgcatcttattataatcatacattttgatcctaaacatccttnnnnnnnnn |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
40001693 |
tttagtggagtagcaatcacaaacatcattatgttgttaatgtttgcactgcatc---taataatcatacattttgatcctaaacatccttaaaaaaaa- |
40001788 |
T |
|
| Q |
301 |
gttacttcatggttattgtttcaaactgctctaaggtccaatcataaaccataaaggtctaataagacggtaatttc |
377 |
Q |
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||||| ||||||||||||||| ||||||| || ||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
40001789 |
-ttactccatggttattgtttcggactgctccaaagtccaatcataaaccataaaggtttaataagacggttatttc |
40001864 |
T |
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