View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12767_high_20 (Length: 388)
Name: NF12767_high_20
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_high_20 |
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| [»] scaffold0201 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 1982011 - 1982371
Alignment:
| Q |
18 |
tactggagattgtggatctacaggtttcgggagaggggacgacaccagagaaagggcagagatcgacgatgatggtggctgagttttgagcagattcagt |
117 |
Q |
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| T |
1982011 |
tactggagattgtggatctactggtttcgggagaggggacgacaccagagaaagggcagagatcgacgatgatggtggctgagttttgagcagattcagt |
1982110 |
T |
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| Q |
118 |
tgcttcaatggtggattcaatgacttcaattgcggcagagacatcatagttgtgttgtgtggtggtgccttcggcggtggcgttgaagtggtgttgtcat |
217 |
Q |
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| T |
1982111 |
tgcttcaatggtggattcaatgacttcaattgcagcagagacatcatagttgtgttgtgtggtggtgccttcggcggtggcgttgaagtggtgttgtcat |
1982210 |
T |
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| Q |
218 |
gtggtttcttaaaaggtgttactcttagacactaagtttcttcttcatgtggctcaacttctttttcctcaagactctcctctttcaaattttctttgaa |
317 |
Q |
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| T |
1982211 |
gtggtttcttaaaaggcgttactcttagacactaagtttcttcttcatgtggctcaacttctttttcctcaagactctcctctttcaaattttctttgaa |
1982310 |
T |
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| Q |
318 |
tttttcaagcttctggaagatttttgtgcatgctattgtgagagcatgttgggaacctttg |
378 |
Q |
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| T |
1982311 |
tttttcaagcttctggaagatttttgtgcatgctattgtgagagcatgttgggaacctttg |
1982371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 203 - 378
Target Start/End: Original strand, 25839962 - 25840137
Alignment:
| Q |
203 |
aagtggtgttgtcatgtggtttcttaaaaggtgttactcttagacactaagtttcttcttcatgtggctcaacttctttttcctcaagactctcctcttt |
302 |
Q |
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| T |
25839962 |
aagtcgtgctgtcatgtgtttgtttaagaggtgttactattagacactgagttgcttcttcgtgtggttcaccttattttttctcggcactctcctcttt |
25840061 |
T |
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| Q |
303 |
caaattttctttgaatttttcaagcttctggaagatttttgtgcatgctattgtgagagcatgttgggaacctttg |
378 |
Q |
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| T |
25840062 |
caaattttcttttaatttttcaaacttctcgaagatttttgcgcaggctattttgagatattgttgggaagctttg |
25840137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 37089542 - 37089594
Alignment:
| Q |
73 |
gcagagatcgacgatgatggtggctgagttttgagcagattcagttgcttcaa |
125 |
Q |
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| T |
37089542 |
gcagagattaacgatggtggcggctgagttttgagcagattcagtcgcttcaa |
37089594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 20875 - 20799
Alignment:
| Q |
172 |
ttgtgtggtggtgccttcggcggtggcgttgaagtggtgttgtcatgtggtttcttaaaaggtgttactcttagaca |
248 |
Q |
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| T |
20875 |
ttgtgtggtggtgccctggacggtggcgctgaagtggtgttgatgtatggttgcttaagaggtgctactcgtagaca |
20799 |
T |
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