View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12767_high_21 (Length: 376)
Name: NF12767_high_21
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_high_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 27 - 361
Target Start/End: Original strand, 43514177 - 43514511
Alignment:
| Q |
27 |
ttagaagccttaggatcatccaagtttatttcataatttataaccatactaggagatgcaacataacattgattaacagataagaatcacttgatattta |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43514177 |
ttagaagccttaggatcatccaagtttatttcataatttataaccatactaggagatgcaacataacattgattaacagataagaatcacttgatattta |
43514276 |
T |
|
| Q |
127 |
tctataacagaaagagaaaatgacatatggactaaccttagaaaatccattcacggttagagttttaccccacatccctggtaaagatgcaaagctagtg |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43514277 |
tctataacagaaagagaaaatgacatatggactaaccttagaaaatccattcacggttagagttttaccccacatccccggtaaagatgcaaagctagtg |
43514376 |
T |
|
| Q |
227 |
tgtgttgctggtgcataaattatgtgttcataaatttcatcagagataacctgcacaaaacaacttttaagattttaagtggaactacatttaaagatga |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43514377 |
tgtgttgctggtgcataaattatgtgttcataaatttcatcagagataacctgcacaaaacaacttttaagattttaagtggaactacatttaaagatga |
43514476 |
T |
|
| Q |
327 |
acacattgaagcccttgtgatcccatcaaagaagt |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
43514477 |
acacattgaagcccttgtgatcccatcaaagaagt |
43514511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 135 - 354
Target Start/End: Original strand, 38103912 - 38104131
Alignment:
| Q |
135 |
agaaagagaaaatgacatatggactaaccttagaaaatccattcacggttagagttttaccccacatccctggtaaagatgcaaagctagtgtgtgttgc |
234 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||| ||||||||||||||| || |||||| | ||||||||||||||||| || |||||||| |
|
|
| T |
38103912 |
agaaagagaacatgacatacaaactaaccttagaaaatccgttcacggttagagttctattccacattctaggtaaagatgcaaagcttgtatgtgttgc |
38104011 |
T |
|
| Q |
235 |
tggtgcataaattatgtgttcataaatttcatcagagataacctgcacaaaacaacttttaagattttaagtggaactacatttaaagatgaacacattg |
334 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| | ||| |||| ||||| |
|
|
| T |
38104012 |
tggggcataaattatgtgttcataaatttcatcagagataacctgcacaaaacaactattaagatcttaagaggaactacgatccaagttgaatacatta |
38104111 |
T |
|
| Q |
335 |
aagcccttgtgatcccatca |
354 |
Q |
| |
|
|||| ||||||||| ||||| |
|
|
| T |
38104112 |
aagcacttgtgatctcatca |
38104131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University