View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12767_high_23 (Length: 351)
Name: NF12767_high_23
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_high_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 21 - 340
Target Start/End: Complemental strand, 1969057 - 1968738
Alignment:
| Q |
21 |
ccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaatt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1969057 |
ccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaatt |
1968958 |
T |
|
| Q |
121 |
ttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968957 |
ttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctg |
1968858 |
T |
|
| Q |
221 |
ctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttg |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968857 |
ctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttg |
1968758 |
T |
|
| Q |
321 |
tcacttccctcctctttcat |
340 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1968757 |
tcacttccctcctctttcat |
1968738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 2007956 - 2008277
Alignment:
| Q |
19 |
acccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2007956 |
acccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacaagaa |
2008055 |
T |
|
| Q |
119 |
ttttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggc |
218 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||| || ||||| |
|
|
| T |
2008056 |
ttttgtattactcaattccaaacccaaagctagctccacaatttgctcctgtgaaagtgtacctccactcccaaaagatacatacaaaaccgaacaaggt |
2008155 |
T |
|
| Q |
219 |
tgctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
2008156 |
tgctgtttatccaaccaggccagacactccaagccattagcatcatcaccagattttgtttctgtttcgataataggtccaacaggatacactggagggt |
2008255 |
T |
|
| Q |
319 |
tgtcacttccctcctctttcat |
340 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
2008256 |
tgtcacctccctcctctttcat |
2008277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 2011571 - 2011887
Alignment:
| Q |
19 |
acccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaa |
118 |
Q |
| |
|
|||||||||||||||| || |||| |||| ||||||| ||||||||||||| ||||| |||||||||| ||||| |||||||||| |||||| ||| |
|
|
| T |
2011571 |
acccagatggtaaaaattgtaaagcatcaacatcattttgtgctgaaagatatgctgcattagatgaactactacttggtgctcgcacaacccataggaa |
2011670 |
T |
|
| Q |
119 |
ttttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggc |
218 |
Q |
| |
|
||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
2011671 |
tttctgattactcaattccaaacccaaagccagctcaacaatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagat |
2011770 |
T |
|
| Q |
219 |
tgctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggt |
318 |
Q |
| |
|
|| ||||| || ||||| | |||||||||||| ||||||||||||||| | |||| |||| |||| ||||| || |||||||||||||| || | ||||| |
|
|
| T |
2011771 |
tgttgtttgtctaaccatgacagacactccaaaccattagcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggt |
2011870 |
T |
|
| Q |
319 |
tgtcacttccctcctct |
335 |
Q |
| |
|
|| ||||||| |||||| |
|
|
| T |
2011871 |
tgccacttccttcctct |
2011887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 2004576 - 2004897
Alignment:
| Q |
19 |
acccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaa |
118 |
Q |
| |
|
|||| ||||| ||||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| |||| |
|
|
| T |
2004576 |
acccggatggcaaaaactgccaagtgtcagcatcattttgtgctgaaaaatatcctgcactagatgaactactacttggtgctcgcaaaacccacaagaa |
2004675 |
T |
|
| Q |
119 |
ttttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggc |
218 |
Q |
| |
|
| | |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
2004676 |
tatcttattactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggt |
2004775 |
T |
|
| Q |
219 |
tgctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggt |
318 |
Q |
| |
|
||||||||||||||||| | ||||| ||||| |||| | | ||||||| |||||| | || |||| || ||||||||||||||||| ||||||| |
|
|
| T |
2004776 |
tgctgtttatccaaccatgttagacattccaacccatgattagcatcaccggaactttctatcgtcgggatgatgggtccaacaggatacacaggagggt |
2004875 |
T |
|
| Q |
319 |
tgtcacttccctcctctttcat |
340 |
Q |
| |
|
| |||||||| || |||||||| |
|
|
| T |
2004876 |
tttcacttccttcatctttcat |
2004897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 1965123 - 1964807
Alignment:
| Q |
19 |
acccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaa |
118 |
Q |
| |
|
|||||||||||||||| | ||||| |||| |||||||| ||||||||||||| |||||||||||||||| ||||| ||||||| || |||||| ||| |
|
|
| T |
1965123 |
acccagatggtaaaaatttcaaagggtcaccgtcattttgtgctgaaagatatgctgcactagatgaactactacttggtgctcacacaacccataggaa |
1965024 |
T |
|
| Q |
119 |
ttttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggc |
218 |
Q |
| |
|
||| | |||||||||||| || || | |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
1965023 |
tttctgattactcaattctaaccccagagccagctgaacaatttgttcgtgtgaaagtgtaccaccactcccgaaagacacatacaaaactgaacaagat |
1964924 |
T |
|
| Q |
219 |
tgctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggt |
318 |
Q |
| |
|
|| ||||| || ||||| | |||||||||||| |||||||||||| | |||| |||| |||| | ||| || ||||||||||||||||| | ||||| |
|
|
| T |
1964923 |
tgttgtttgtctaaccatgacagacactccaaaccattagcatcacggtcagaacatgttactgtatcgatgatgggtccaacaggatacacagaagggt |
1964824 |
T |
|
| Q |
319 |
tgtcacttccctcctct |
335 |
Q |
| |
|
|| ||||||| |||||| |
|
|
| T |
1964823 |
tgccacttccttcctct |
1964807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 115 - 328
Target Start/End: Original strand, 2015066 - 2015279
Alignment:
| Q |
115 |
agaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagca |
214 |
Q |
| |
|
||||||| | |||||||||||||||||| ||||||||||| ||||||||| || |||||||| ||||||||||||||||| ||||||| |||||| || |
|
|
| T |
2015066 |
agaatttatgattactcaattccaaacccaaagccagctcattaatttgttcttgcgaaagtgttccaccactcccgaaagacacatacagaactgaaca |
2015165 |
T |
|
| Q |
215 |
aggctgctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactgga |
314 |
Q |
| |
|
|||| | ||||| |||||||| |||||||| || || ||||||||||||||| || ||||| |||||||||||| |||||||||| |||||| || |
|
|
| T |
2015166 |
aggccgttgtttgtccaaccatgccagacattcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaaga |
2015265 |
T |
|
| Q |
315 |
gggttgtcacttcc |
328 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
2015266 |
aggttttcacttcc |
2015279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 115 - 303
Target Start/End: Original strand, 2018449 - 2018637
Alignment:
| Q |
115 |
agaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagca |
214 |
Q |
| |
|
||||||| | |||||||||||||||||| ||||||||||| ||||||||| || |||||||| ||||||||||| ||||| |||||||||||||| || |
|
|
| T |
2018449 |
agaatttatgattactcaattccaaacccaaagccagctcattaatttgttcttgcgaaagtgtgccaccactcccaaaagaaacatacaaaactgaaca |
2018548 |
T |
|
| Q |
215 |
aggctgctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacag |
303 |
Q |
| |
|
|| |||||||| |||||||| |||||||||| ||| |||||| |||||||||| || | ||| |||||||||||||||||||||| |
|
|
| T |
2018549 |
agtttgctgtttgtccaaccatgccagacacttcaacccattatcatcatcacccgatttggttggcgtttggataattggtccaacag |
2018637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 115 - 328
Target Start/End: Complemental strand, 1963363 - 1963150
Alignment:
| Q |
115 |
agaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagca |
214 |
Q |
| |
|
||||||| | |||||||||||||||||| ||||||| ||| |||||||||| || |||||||| |||||||| || ||||| |||||||||||||| || |
|
|
| T |
1963363 |
agaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaaca |
1963264 |
T |
|
| Q |
215 |
aggctgctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactgga |
314 |
Q |
| |
|
||| ||||| |||||||| | ||||||||| || ||||||||||||||| || ||||| |||||||||||| |||||||||| |||||| || |
|
|
| T |
1963263 |
aggacattgtttgtccaaccatgtcagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaaga |
1963164 |
T |
|
| Q |
315 |
gggttgtcacttcc |
328 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
1963163 |
aggttttcacttcc |
1963150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 2436865 - 2436704
Alignment:
| Q |
19 |
acccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaa--ga----tatcctgcactagatgaactgctactcggtgctcgcaaaaccca |
112 |
Q |
| |
|
||||| |||||||||| ||||||| ||||| ||||||| |||||||| || ||| |||||||||||||||| ||| | ||||||| | |||||| |
|
|
| T |
2436865 |
acccacatggtaaaaattgcaaagggtcaacatcattttgtgctgaaactgaaaagtatgctgcactagatgaactactatttggtgctcttacaaccca |
2436766 |
T |
|
| Q |
113 |
cgagaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaa |
174 |
Q |
| |
|
||||||| | ||||||| |||||| ||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
2436765 |
taagaatttctgattactcgattccagaccgaaagccagctcaacaatttgttcttgtgaaa |
2436704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 2433163 - 2433039
Alignment:
| Q |
204 |
aaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacag |
303 |
Q |
| |
|
|||||||||||||| || || | ||||||||| | |||||||||||| |||||||||||| | ||||||||| ||| ||||| || |||||||||| |
|
|
| T |
2433163 |
aaaactgagcaaggttgttggtcatccaaccatgacagacactccaacatattagcatcatcgtcagaacttgttattgtctggatgatgggtccaacag |
2433064 |
T |
|
| Q |
304 |
gatacactggagggttgtcacttcc |
328 |
Q |
| |
|
||||||| |||| || |||||||| |
|
|
| T |
2433063 |
gatacacaagaggattttcacttcc |
2433039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 5902629 - 5902402
Alignment:
| Q |
19 |
acccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaa |
118 |
Q |
| |
|
|||||| |||||||||||||||| |||| ||||||||||||||||||||| | |||| | |||| ||||| ||||||| | |||||| |||| |
|
|
| T |
5902629 |
acccaggtggtaaaaactgcaaaagatcaacatcattttctgctgaaagatatgcaccactggctgaa---ctacttggtgctcttacaacccataagaa |
5902533 |
T |
|
| Q |
119 |
ttttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggc |
218 |
Q |
| |
|
||| | |||||||||||||||||| | ||||| ||| |||||||||| |||||||||| ||||||||| || ||||| |||||||||||||| ||||| |
|
|
| T |
5902532 |
tttatgattactcaattccaaaccaatagccaactcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacatacaaaactgaacaaggt |
5902433 |
T |
|
| Q |
219 |
tgctgtttatccaaccaggccagacactcca |
249 |
Q |
| |
|
|| ||||||| ||||| | ||||||||||| |
|
|
| T |
5902432 |
tgttgtttatgtaaccatgtcagacactcca |
5902402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 90 - 249
Target Start/End: Complemental strand, 5906045 - 5905886
Alignment:
| Q |
90 |
ctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcc |
189 |
Q |
| |
|
||||| ||||||| | |||||| ||||||| | |||||||||||||||||| | ||| ||||| || ||||||| |||||||||| |||||| || | |
|
|
| T |
5906045 |
ctacttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcagtttgttcttgtgaaagtgcaccaccgcttc |
5905946 |
T |
|
| Q |
190 |
cgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactcca |
249 |
Q |
| |
|
| ||||| |||||||||||||| ||||||||||||||||| ||||| | || |||||||| |
|
|
| T |
5905945 |
caaaagaaacatacaaaactgaacaaggctgctgtttatctaaccatgtcaaacactcca |
5905886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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