View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12767_high_3 (Length: 707)

Name: NF12767_high_3
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12767_high_3
NF12767_high_3
[»] chr2 (1 HSPs)
chr2 (16-689)||(102955-103628)


Alignment Details
Target: chr2 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 16 - 689
Target Start/End: Complemental strand, 103628 - 102955
Alignment:
Q  16 aagcaaagggccatgagactctaggcaaaaatcgaactatagaagatattgaaaaaccacaacacctgaagcctatcatctttcagggtagataatcaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  103628 aagcaaagggccatgagactctaggcaaaaatcgaactatagaagatattgaaaaaccacaacacctgaagcctatcatctttcagggtagataatcaaa 103529  T
Q  116 catcattatatcaaacaagccctctacgttggtgctgtcacgctcctccagcataggttgtgtagaataaaccaatgatatgctcctatagaccacgatg 215  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  103528 catcattatattaaacaagccctctacgttggtgctgtcacgctcctccagcataggttgtgtagaataaatcaatgatatgctcctatagaccacgatg 103429  T
Q  216 aaatgtttgcgaggttcattctcttacgttctacttcctaatttcatgccaatatttattgtacataacaactagtgagttggaagacctaggagcatta 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  103428 aaatgtttgcgaggttcattctcttacgttctacttcctaatttcatgccaatatttattgtacataacaactagtgagttggaagacctaggagcatta 103329  T
Q  316 gcaaccaggccccacaatagatgaccggtcctcgggattgacaactgcttcagaatccagtttgcttggtttaccttcttcattgctcggaagacctatt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  103328 gcaaccaggccccacaatagatgaccggtcctcgggattgacaactgcttcagaatccagtttgcttggtttaccttcttcattgctcggaagacctatt 103229  T
Q  416 ttcggtgaaagcttcttcacctcctctggtgtgtagatgaacattttcctcacaacgctacaaaattcactgcagtaaaacagccagatagaactcaaca 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  103228 ttcggtgaaagcttcttcacctcctctggtgtgtagatgaacattttcctcacaacgctacaaaattcactgcagtaaaacagccagacagaactcaaca 103129  T
Q  516 tgtatataaaattgcaaactactatgctacatatgatggcgtcaaagagaataaatgttattaataggatcaaataatcttacagccacggatcatcccc 615  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  103128 tgtatataaaattgcaaactattatgctacatatgatggcgtcaaagagaatatatgttattaataggatcaaataatcttacagccacggatcatcccc 103029  T
Q  616 aaccatcatcatatcatcttcattgtcagtgtaaactaccagccannnnnnngttgctccacagagctcaccct 689  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  103028 aaccatcatcatatcatcttcattgtcagtgtaaactaccagccatttttttgttgctccacagagctcaccct 102955  T

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