View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12767_high_38 (Length: 216)

Name: NF12767_high_38

Description: NF12767

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF12767_high_38

[»] chr3 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 195; E-Value: 1e-106

Query Start/End: Original strand, 1 - 195

Target Start/End: Complemental strand, 12787833 - 12787639

Alignment:

Q	1	aagtgttttgatgagtgttcaaagttgaagtatttggatttgagtacaaataatctaagtggtgctttatggaatggaatttcaaggttgaaaatgtttt	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	12787833	aagtgttttgatgagtgttcaaagttgaagtatttggatttgagtacaaataatctaagtggtgctttatggaatggaatttcaaggttgaaaatgtttt	12787734	T

Q	101	caatttctgagaattttctaagtgggattgttccttcacaagcttttccaatgaattgtagtcttgaaaaattggatctctcagttaataaattt	195	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	12787733	caatttctgagaattttctaagtgggattgttccttcacaagcttttccaatgaattgtagtcttgaaaaattggatctctcagttaataaattt	12787639	T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 5 - 87

Target Start/End: Original strand, 45296688 - 45296770

Alignment:

Q	5	gttttgatgagtgttcaaagttgaagtatttggatttgagtacaaataatctaagtggtgctttatggaatggaatttcaagg	87	Q
		\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\| \|\| \|\|\|\|\| \| \| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|
T	45296688	gttttgatcaatgttcaaagttgaagtacttggatttgagcaccaacaagctgagtggaggtatatggaatggatttgcaagg	45296770	T

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