View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12767_high_40 (Length: 201)
Name: NF12767_high_40
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_high_40 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 5271597 - 5271526
Alignment:
| Q |
92 |
agttaggatattttgaatttaaaacgtaaaaggttggtggtgtagcatagaacaacaagaaatccgaaatcc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5271597 |
agttaggatattttgaatttaaaacgtaaaaggttggtggtgtagcatagaacaacaagaaatccgaaatcc |
5271526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 5271711 - 5271639
Alignment:
| Q |
16 |
aaaggagtgaggaaaagacatatagatagatagtcaataactaaaatcaataaaaatatggaaattcttgtcctaaa |
92 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5271711 |
aaaggagtgaggaaaagacatatagatag----tgaataactaaaatcaacaaaaatatggaaattcttgtcctaaa |
5271639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University