View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12767_low_10 (Length: 487)
Name: NF12767_low_10
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 8189743 - 8189266
Alignment:
| Q |
1 |
ttacattactgtaattgaacttcttattttaatattttagaagagacatgtaaaaaatacaaatataaaaatgctcacaagcttatctcaaggaaaatct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8189743 |
ttacattactgtaattgaacttcttattttaatattttagaagagacttgtaaaaaata-aaatataaaaatgctcacaagcttatctcaaggaaaatct |
8189645 |
T |
|
| Q |
101 |
gaacaaatttccaagtggagataggtaaacgaatttaattttagaacttgtgtctagggataaagaggaatgatatgacaatgcctccaacataaacctt |
200 |
Q |
| |
|
||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8189644 |
gaataaatttccaagtggagatagatatacgaatttaattttagaacttgtgtctagggataaagaggaatgatatgacaatgcctccaacataaacctt |
8189545 |
T |
|
| Q |
201 |
ccaatttcaaacggcgacgtatgttttccaccgaatataatattatgtcaattataatcaaaagcaaagtatcaatgttatgttccttaatcgaagaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8189544 |
ccaatttcaaacggcgacgtatgttttccaccgaatataatattatgtcaattataatcaaaagcaaagtatcaatgttatgttccttgatcgaagaaca |
8189445 |
T |
|
| Q |
301 |
attttaaggttattaaactaaattaacatgatgagaatgagaacgacgagatagtggttggttttgcaatgagaagcagatagagaagcaaaaacattaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8189444 |
attttaaggttattaaactaaattaacatgatgagaatgagaacgacgagatagtggtttgttttgcaatgagaagcagatagagaagcaaaaacattaa |
8189345 |
T |
|
| Q |
401 |
gttggcttagagtagggctacgtggtctgttggtaccaacaaataaagctagttggtccgctccattttagttcatctc |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8189344 |
gttggcttagagtagggctacgtggtctgttggtaccaacaaataaagctagttggtccgctccattttagttcgtctc |
8189266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University