View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12767_low_12 (Length: 463)
Name: NF12767_low_12
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 3 - 446
Target Start/End: Complemental strand, 49677350 - 49676911
Alignment:
| Q |
3 |
taatgctcaaatctcttttgttgaatatgcaaatgtgaacaccttcacataaaatatggtgcccactgtacattatttgaattgatatgcatttaggcat |
102 |
Q |
| |
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|||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||| ||| |
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| T |
49677350 |
taatgctcaaatctcttttgttgaat--gcatatgtgaacac-ttcacataaaatatggtgtccactgtacaacatttgaattgatatgcatttagacat |
49677254 |
T |
|
| Q |
103 |
tcaattggcttaacaaaataagactcatatcagaattgaaactatcaaaccagttgattaaagtatctccaaaatcatctacgtcatatttcaaaaatca |
202 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49677253 |
tcaattggcttaacaaaataagactcat--cagaattgaaactatcaaacctgttgattaaagtatctccaaaatcatctacgtcatatttcaaaaatca |
49677156 |
T |
|
| Q |
203 |
aaatatgtcaataaaagaaacgatacccaatgcaacgaacaatgataagtatgaaagcaattatacccaatgatttaactattgtctaatgcttccatag |
302 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49677155 |
aaatatgttaatgaaagaaacgatacccaatgcaacgaacaatgataagtatgaaagcaattatacctaatgatttaactattgtctaatgcttccatag |
49677056 |
T |
|
| Q |
303 |
aagaaaagaatcgatg-acgnnnnnnntgataacaagttacaacaacaatgaaaagagaaactgaaaaagtgtgtatgcagtttataaccagagtgaaag |
401 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49677055 |
aagaaaagaatcgatgaacgaaaaaaatgataacaagttacaacaacaatgaaaagagaaactgaaaaagtgtgtatgcaatttataaccagagtgaaag |
49676956 |
T |
|
| Q |
402 |
gaatgagaagaggcgtgacaacgtttgtattttttcatttgatgg |
446 |
Q |
| |
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||||||||||||||||| | ||||| |||||||||||||||||| |
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| T |
49676955 |
gaatgagaagaggcgtggcggcgtttctattttttcatttgatgg |
49676911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 414
Target Start/End: Original strand, 38303293 - 38303495
Alignment:
| Q |
216 |
aaagaaacgatacccaatgcaacgaacaatgataagtatgaaagcaattatacccaatgatttaactattgtctaatgcttccatagaagaaaagaatcg |
315 |
Q |
| |
|
||||||| ||||| |||||||| |||| ||| |||||||||||||||||||||||||||||| || ||||| ||||||||||| || ||| | |||| |
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| T |
38303293 |
aaagaaatgatacataatgcaacagacaaggatgagtatgaaagcaattatacccaatgatttagctgttgtccaatgcttccatggaggaacaacatcg |
38303392 |
T |
|
| Q |
316 |
atgacgnnnnnnntgataacaagttacaacaacaatgaaaagagaaactgaaaaagtgtgtatgcagtttataaccagag----tgaaaggaatgagaag |
411 |
Q |
| |
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|||| | ||| |||||||| || |||||||| || |||||||||||| ||| ||||||||||||||||||||| | |||||||||||||| |
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| T |
38303393 |
atgatgaaaaaaatgagaacaagttgcagtaacaatgagaaaagaaactgaaaaggtgagtatgcagtttataaccagagtacttaaaaggaatgagaag |
38303492 |
T |
|
| Q |
412 |
agg |
414 |
Q |
| |
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||| |
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|
| T |
38303493 |
agg |
38303495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 212 - 446
Target Start/End: Complemental strand, 16911473 - 16911239
Alignment:
| Q |
212 |
aataaaagaaacgatacccaatgcaacgaacaatgataagtatgaaagcaattatacccaatgatttaactattgtctaatgcttccatagaagaaaaga |
311 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| ||| | ||| |||||| |||| ||||||||||| | |||||| |||||||| ||||| ||||| |
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| T |
16911473 |
aataaaagaaatgatacccaatgcaacaaacaaggatgattattcaagcaactatatccaatgatttagccattgtccaatgcttcgatagagaaaaagc |
16911374 |
T |
|
| Q |
312 |
atcgatgacgnnnnnnntgataacaagttacaacaacaatgaaaagagaaactgaaaaagtgtgtatgcagtttataaccagagtgaaaggaatgagaag |
411 |
Q |
| |
|
|| ||||| ||| ||||||||||||||||||||| ||||||| |||||| ||| |||||| |||||||| |||||||||||||||||||| |
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|
| T |
16911373 |
atggatgataaaaaacatgagaacaagttacaacaacaatgagaagagaagatgaaaatatgtatatgcactttataactagagtgaaaggaatgagaag |
16911274 |
T |
|
| Q |
412 |
aggcgtgacaacgtttgtattttttcatttgatgg |
446 |
Q |
| |
|
||||||| | |||||| |||| |||||||||||| |
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|
| T |
16911273 |
aggcgtgtctacgtttccatttattcatttgatgg |
16911239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 216 - 319
Target Start/End: Original strand, 34794956 - 34795059
Alignment:
| Q |
216 |
aaagaaacgatacccaatgcaacgaacaatgataagtatgaaagcaattatacccaatgatttaactattgtctaatgcttccatagaagaaaagaatcg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||| |||| ||||||||||||||| || ||||| |||||||| || || |||||| || | |
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| T |
34794956 |
aaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttggctgttgtccaatgcttctatggaggaaaagcatgg |
34795055 |
T |
|
| Q |
316 |
atga |
319 |
Q |
| |
|
|||| |
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|
| T |
34795056 |
atga |
34795059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 34795088 - 34795151
Alignment:
| Q |
355 |
aagagaaactgaaaaagtgtgtatgcagtttataaccagagtgaaaggaatgagaagaggcgtg |
418 |
Q |
| |
|
||||||||||||||| | ||| ||||| ||||||||||||||||| ||||| |||||||||||| |
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|
| T |
34795088 |
aagagaaactgaaaaggcgtgcatgcaatttataaccagagtgaagggaataagaagaggcgtg |
34795151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 333 - 415
Target Start/End: Original strand, 17364533 - 17364615
Alignment:
| Q |
333 |
aacaagttacaacaacaatgaaaagagaaactgaaaaagtgtgtatgcagtttataaccagagtgaaaggaatgagaagaggc |
415 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17364533 |
aacaagttacaacaacaatgggaagagaaattgaaaatgtttgtatgcagtttataaccagagtgaaaggaatgagaagaggc |
17364615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 414
Target Start/End: Original strand, 30332717 - 30332914
Alignment:
| Q |
216 |
aaagaaacgatacccaatgcaacgaacaatgataagtatgaaagcaattatacccaatgatttaactattgtctaatgcttccatagaagaaaagaatcg |
315 |
Q |
| |
|
||||||| ||| | |||||||| ||||| |||||||| |||||||| |||| | ||||| ||| || |||| ||||||||||| || |||||| |||| |
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|
| T |
30332717 |
aaagaaatgatgcacaatgcaatgaacagggataagtacgaaagcaactatatcgaatgaattagctgttgtgcaatgcttccatggaggaaaagcatcg |
30332816 |
T |
|
| Q |
316 |
atgacgnnnnnnntgataacaagttacaacaacaatgaaaagagaaactgaaaaagtgtgtatgcagtttataaccagagtgaaaggaatgagaagagg |
414 |
Q |
| |
|
|||| | ||| |||| |||||||||||| |||||||||||||| |||| || |||||| ||| ||||| |||| ||||| |||||||||||| |
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|
| T |
30332817 |
atgatgaaaaacatgagaacacgttacaacaacattgaaaagagaaact-aaaaggtatgtatgtggttcataactagagggaaagtaatgagaagagg |
30332914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 30332411 - 30332460
Alignment:
| Q |
79 |
ttgaattgatatgcatttaggcattcaattggcttaacaaaataagactc |
128 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||| |||||||| |
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|
| T |
30332411 |
ttgaattgatatgcatttagacattcagttggcttaacaaattaagactc |
30332460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 12140375 - 12140322
Alignment:
| Q |
79 |
ttgaattgatatgcatttaggcattcaattggcttaacaaaataagactcatat |
132 |
Q |
| |
|
||||||||||||||||||| ||||| | ||| ||||||||||||| |||||||| |
|
|
| T |
12140375 |
ttgaattgatatgcatttaagcatttagttgacttaacaaaataatactcatat |
12140322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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