View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12767_low_14 (Length: 443)
Name: NF12767_low_14
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 10597206 - 10596792
Alignment:
| Q |
19 |
acctgtaaagtatctaacttcagcaacagtctcattatagtttctccaatagcaattttttgcttgttatcattttgaaaatcagaatgaccttcaaaag |
118 |
Q |
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| T |
10597206 |
acctgtatagtatctaacttcagcaacagtctcattatagtttcaccaattgcaattttttgcttgttatcattttgaaaatcagaatgaccttcaaaag |
10597107 |
T |
|
| Q |
119 |
cttgaacacgttccctaacatcggtcacctccttactgacttcacctatctgccttaatttcttcaaaggctcccattttcttactagataaccgcgata |
218 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10597106 |
cttgaacatgtgccctaacatcggtcacctccttactgacttcacctatctgcctcaatttctttaaaggctcccattttcttactagataaccgcgata |
10597007 |
T |
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| Q |
219 |
aacagcttgtatcaaaacagcagcatctgcatccgacagaactcgtcttccacttttaccagcttcattggttgttgtatttctatcctttacagaatgc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| | | ||| || |
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| T |
10597006 |
aacagcttgtatcaaaacagcagcatctgcatccgacagaactcgtcttccacttttaccaccttcattagttgttgtgtttctatcttctgtagagtgt |
10596907 |
T |
|
| Q |
319 |
tctgaagagtctcgcgtcttattttccgtgcctttctctttattcttatcatttgtcttattttggcacacttgaatagttttcacctctggtgttaact |
418 |
Q |
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|||||||| || | || ||||||||| |||||||||| ||||||||||||||||| ||||||||| ||||| ||||||||| |||||||| | || |
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| T |
10596906 |
tctgaagactcccctgtaatattttccgcccctttctcttccttcttatcatttgtcttgttttggcacgcttgagtagttttcatctctggtgcaacct |
10596807 |
T |
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| Q |
419 |
ctttactagcctttg |
433 |
Q |
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| | ||||||||||| |
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| T |
10596806 |
cctcactagcctttg |
10596792 |
T |
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