View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12767_low_15 (Length: 434)
Name: NF12767_low_15
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 67 - 390
Target Start/End: Original strand, 7427502 - 7427822
Alignment:
| Q |
67 |
ctacatgtcaagacccaaacacaataagggattaaaccactactaattatgataatcgagagcaaagtagcattttttgttttcaaccaccaaaacgaaa |
166 |
Q |
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| T |
7427502 |
ctacatgtcaagacccaaacacataaagggattaaaccacta---attatgataatcaagagcaaagtagcactttttgttatcaaacaccaaaacgaaa |
7427598 |
T |
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| Q |
167 |
ggaacctaattttctctaacaattgttgcagttgttgttccttatgattaaatattatgttatttctttcttttcagattacccaaacgcatgcaaacca |
266 |
Q |
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| T |
7427599 |
ggagtttaattttctctaacaattgttgcggttgttgttccttaggattaaatattatgttatttctttcttttcagattacccaaacacatgcaaacca |
7427698 |
T |
|
| Q |
267 |
aattaaccgtaaagaagaccgtacaaattttgagaatccacccgtctgactggattaagaaagtcatccgataaatgaaatgagtcaaccattaagatac |
366 |
Q |
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| T |
7427699 |
aattaattgtaaagaagaccgtacaaattttgagaatccacccgtctgaccggattaagaaagtcatccgataaatgaaatgagtcaaccattaagatac |
7427798 |
T |
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| Q |
367 |
caaataatgtcgaagtaattacaa |
390 |
Q |
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| T |
7427799 |
caaataatgtcgaagtaattacaa |
7427822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 388 - 424
Target Start/End: Original strand, 7428332 - 7428368
Alignment:
| Q |
388 |
caaaaatatattgtcgtttcctggtcacttacctttg |
424 |
Q |
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| T |
7428332 |
caaaaacatattgtcgtttcctggtcacttacctttg |
7428368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 3394907 - 3394859
Alignment:
| Q |
225 |
gttatttctttcttttcagattacccaaacgcatgcaaaccaaattaac |
273 |
Q |
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| T |
3394907 |
gttatttctttcttttcaaattacccaaactaaagcaagccaaattaac |
3394859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 33330474 - 33330425
Alignment:
| Q |
225 |
gttatttctttcttttcagattacccaaacgcatgcaaaccaaattaacc |
274 |
Q |
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| T |
33330474 |
gttatttctttctttccatattacccaaacacaagcaagccaaattaacc |
33330425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 21430912 - 21430957
Alignment:
| Q |
227 |
tatttctttcttttcagattacccaaacgcatgcaaaccaaattaa |
272 |
Q |
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| T |
21430912 |
tatttttttctttccaaattacccaaacacatgcaaaccaaattaa |
21430957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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