View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12767_low_16 (Length: 422)
Name: NF12767_low_16
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 738866 - 739273
Alignment:
| Q |
1 |
aacataataacaaaacatatatacctaaatgcctcttagaaatactttaaattgtggccgtaacataacgattttagaggtcaaataaattgcaattacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
738866 |
aacataataacaaaacatatatacctaaatgcctcttagaaatagtttaaattgtggccgtaacataacgattttagaggtcaaataaattgcaattacg |
738965 |
T |
|
| Q |
101 |
gtcagatataagccgcatttgcctgcattttaccgcaatttaaaacagatatatttggagtgaggggaacttactgatagtgtcgccgatttggaagttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
738966 |
gtcagatataagccgcatttgcctgcattttaccgcaatttaaaacagatat--ttggagtgaggggaacttaccgatagtgtcgccgatttggaagttc |
739063 |
T |
|
| Q |
201 |
ttagtagcagcccatttcttgtaatctatactaccaatgattgtccagccagaagagtctccaaccttgtgaacagctgcatttgaaaccttgatagcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
739064 |
ttagtagcagcccatttcttgtaatctatactaccaatgattgtccagccagaagagtctccaaccttgtgaacagctgcatttgaaaccttgatagcta |
739163 |
T |
|
| Q |
301 |
ccatcataaccatcaagaaaactacagatctctctacaaatcccatgannnnnnnnnnnnnagcaaggaaattagcaaaacttcctcttgaggtgtgtac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
739164 |
ccatcataaccatcaagaaaactacagatctctctacaaatcccatga----ctctctctcagcaaggaaattagcaaaacttcctcttgaggtgtgtac |
739259 |
T |
|
| Q |
401 |
taatgagactcttc |
414 |
Q |
| |
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|||||||||||||| |
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| T |
739260 |
taatgagactcttc |
739273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 307
Target Start/End: Complemental strand, 47218922 - 47218784
Alignment:
| Q |
169 |
acttactgatagtgtcgccgatttggaagttcttagtagcagcccatttcttgtaatctatactaccaatgattgtccagccagaagagtctccaacctt |
268 |
Q |
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||||||| |||||||| || | |||||||||||| |||||||||||||| ||||| || || |||||| | |||||||||| ||| || |||||||| |
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| T |
47218922 |
acttactaatagtgtcaccaagttggaagttcttggtagcagcccattttttgtagtcaatgttaccaagtgtagtccagccagcagaatcaccaacctt |
47218823 |
T |
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| Q |
269 |
gtgaacagctgcatttgaaaccttgatagctaccatcat |
307 |
Q |
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|| |||||||||| ||||| || |||||||||||||| |
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| T |
47218822 |
gtatacagctgcatatgaaatctgcatagctaccatcat |
47218784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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