View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12767_low_2 (Length: 714)
Name: NF12767_low_2
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_low_2 |
 | |
|
| [»] scaffold0272 (1 HSPs) |
| | |
|
| [»] scaffold0016 (3 HSPs) |
| | |
|
| [»] scaffold0719 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 633; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 20 - 703
Target Start/End: Original strand, 5312180 - 5312861
Alignment:
| Q |
20 |
ctacctttctcagcaagttgattttctcttgggttaattctttactcagtttaggttactcaaagccattagatcttgaagacataccttcccttgcttc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5312180 |
ctacctttctcagcaagttgattttctcttgggttaattctttactcagtttaggttactcaaagccattagatcttgaagacataccttcccttgcttc |
5312279 |
T |
|
| Q |
120 |
tgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagagagaagacaaagaaaaattccaggagcttggttctttgg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
5312280 |
tgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagagagaagacagataaaaattccaggagcttggttctttgg |
5312379 |
T |
|
| Q |
220 |
tctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgctt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5312380 |
tctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattaatcagaactatttctgttgtagtttcacctctaatactctatgctt |
5312479 |
T |
|
| Q |
320 |
ttgttaactactcaaatagaactgaggcagatctcaaacaaggtcttttaatagttggttttctgattctcaccaaattagtcgagtctctgtctcaacg |
419 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5312480 |
ttgttaactacgcaaatagaactgaggcagatctcaaacaaggtctttcaatagttggttttctgattctcaccaaattggtcgagtctctgtctcaacg |
5312579 |
T |
|
| Q |
420 |
acattggttttttaactcaaggaggtcaggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaagg |
519 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5312580 |
acattggtttttt--ctcaaggaggtcaggaatgaaaatgagatcagctttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaagg |
5312677 |
T |
|
| Q |
520 |
acaagacactcaaccggcgaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcat |
619 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5312678 |
acaagacactcaaccggcgaaattttgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcat |
5312777 |
T |
|
| Q |
620 |
tgcaacttgttctgtccattgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctcttctcatctgtg |
703 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5312778 |
tgcaacttgttctgtccattgctattctttttggtgttgttggtattggtgctcttcccggtttagtgcctcttctcatctgtg |
5312861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 20 - 695
Target Start/End: Original strand, 5304968 - 5305643
Alignment:
| Q |
20 |
ctacctttctcagcaagttgattttctcttgggttaattctttactcagtttaggttactcaaagccattagatcttgaagacataccttcccttgcttc |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5304968 |
ctacctttctcagcaagttaattttctcttgggttaattctttactcagttttggttactcaaagccattagatcttgaagacataccttcccttgtttc |
5305067 |
T |
|
| Q |
120 |
tgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagagagaagacaaagaaaaattccaggagcttggttctttgg |
219 |
Q |
| |
|
||||||||||||||||||| | ||| |||| |||| ||||| ||||| || ||||| ||||||| ||||||||| ||| | | ||| |||||||||||| |
|
|
| T |
5305068 |
tgaagatgaagcagacatggcttataaaaaatttgttcatgcttgggaatcacttgttagagagaggacaaagaataatacaaagagtttggttctttgg |
5305167 |
T |
|
| Q |
220 |
tctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgctt |
319 |
Q |
| |
|
||| | | ||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
5305168 |
tctatagtaagaactttcttaaaagaaaacatattaatagcattttatgcattaatcagaactatttcggttgccatttcacctcttatactctatgctt |
5305267 |
T |
|
| Q |
320 |
ttgttaactactcaaatagaactgaggcagatctcaaacaaggtcttttaatagttggttttctgattctcaccaaattagtcgagtctctgtctcaacg |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||| | | |||||| ||||||| | |
|
|
| T |
5305268 |
ttgttaactactcaaatagaactgaggcagatctcaaacaaggtcttaccatagtttgttttctgattctcaacaaagttttggagtctttgtctcagag |
5305367 |
T |
|
| Q |
420 |
acattggttttttaactcaaggaggtcaggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaagg |
519 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| ||||| |||||||| |||||||||| |||||||||||||||||| ||| |||||| |
|
|
| T |
5305368 |
acattggtttttcaactcaaggaggtcaggaatgaaaatgagatcagctttgatggcagcagtttatcaaaagcagctaaagctttctagcccggcaaga |
5305467 |
T |
|
| Q |
520 |
acaagacactcaaccggcgaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcat |
619 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5305468 |
acaagacacttggccggcgaaattgtgaattacattgtagttgatgcatatagaatgggagaattcccatggtggtttcatataacatggacttgtgcat |
5305567 |
T |
|
| Q |
620 |
tgcaacttgttctgtccattgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
695 |
Q |
| |
|
||||||||||||| ||||||| ||| ||||||| |||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
5305568 |
tgcaacttgttctttccattgttatcctttttggtgttgtaggtattggtgctcttcctggtttagtccctcttct |
5305643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 20 - 695
Target Start/End: Complemental strand, 5284635 - 5283960
Alignment:
| Q |
20 |
ctacctttctcagcaagttgattttctcttgggttaattctttactcagtttaggttactcaaagccattagatcttgaagacataccttcccttgcttc |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
5284635 |
ctacttttctcagcaagttgattttctcttgggttaattctctactcagattaggttactcaaagccactagatcttgaagacataccttcccttgtttc |
5284536 |
T |
|
| Q |
120 |
tgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagagagaagacaaagaaaaattccaggagcttggttctttgg |
219 |
Q |
| |
|
||||||||||||||||||| | |||||||| || | | ||| ||||| || ||||| ||||| ||||||||||| ||| | | ||| |||||||||||| |
|
|
| T |
5284535 |
tgaagatgaagcagacatggcttatcaaaaattcgttcgtgcttgggaatcacttgttagagacaagacaaagaataatacaaagagtttggttctttgg |
5284436 |
T |
|
| Q |
220 |
tctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgctt |
319 |
Q |
| |
|
||| | |||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
5284435 |
tctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaatcagaactatttctgctgtagtttcacctcttatactttatgctt |
5284336 |
T |
|
| Q |
320 |
ttgttaactactcaaatagaactgaggcagatctcaaacaaggtcttttaatagttggttttctgattctcaccaaattagtcgagtctctgtctcaacg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | ||||| ||||||||||| || |||||||||||| | |
|
|
| T |
5284335 |
ttgttaactactcaaatagaactgaggcagatctcaaacaaggtctttccatagttggtattttaattctaaccaaattagttgattctctgtctcaaag |
5284236 |
T |
|
| Q |
420 |
acattggttttttaactcaaggaggtcaggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaagg |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| | | ||||||||| |||||| |||||| ||||||||||| ||| ||||||| |
|
|
| T |
5284235 |
acattggttttttaactcaaggaggtcaggaatgaaaatgagatcagctcttatggtggcaatttatcaaaagcaactaaagctttctagctcggcaagg |
5284136 |
T |
|
| Q |
520 |
acaagacactcaaccggcgaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcat |
619 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
5284135 |
acaagacactcggccggtgaaattgtgaattacattgtagttgatgcatatagaatgggagaatttccatggtggtttcatatggcatgggcttctgcac |
5284036 |
T |
|
| Q |
620 |
tgcaacttgttctgtccattgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
695 |
Q |
| |
|
| ||| ||||| |||| ||| ||||||||||| |||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
5284035 |
ttcaaattgttttgtctatttttattctttttggtgttgtaggtattggtgctcttccaggtttagtccctcttct |
5283960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 20 - 695
Target Start/End: Complemental strand, 14951450 - 14950774
Alignment:
| Q |
20 |
ctacctttctcagcaagttgattttctcttgggttaattctttactcagtttaggttactcaaagccattagatcttgaagacataccttcccttgcttc |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| | |||| |||||||||||| ||||| |||| ||| |
|
|
| T |
14951450 |
ctacttttctcagcaagttgattttctcttgggttaactctctactcagtttaggttacacaaaggctttagctcttgaagacattccttctcttgtttc |
14951351 |
T |
|
| Q |
120 |
tgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagagagaagacaaagaaaaattccaggagcttggttctttgg |
219 |
Q |
| |
|
||||||||||||||||||| | |||||||| |||||||| |||||||| |||||||||||||| | ||| ||||| || | | ||| |||||||||||| |
|
|
| T |
14951350 |
tgaagatgaagcagacatggcctatcaaaaatttgcgcaagcatgggaatcccttgtaagagaaaggactaagaacgatacgaagagtttggttctttgg |
14951251 |
T |
|
| Q |
220 |
tctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgctt |
319 |
Q |
| |
|
||| | ||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
14951250 |
tctatagttagatcttacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagctgttgtagtttcacctctgatactctatgctt |
14951151 |
T |
|
| Q |
320 |
ttgttaactactcaaatagaactgaggcagatctcaaacaaggtcttttaatagttggttttctgattctcaccaaattagtcgagtctctgtctcaacg |
419 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| || || |||| ||| | | ||||||||||||||| | |
|
|
| T |
14951150 |
ttgttaactactcaaatagaactgaggaagatctcaaacaaggtctttccatagttggttttttggttgtcactaaagtctttgagtctctgtctcaaag |
14951051 |
T |
|
| Q |
420 |
acattggttttttaactc-aaggaggtcaggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaag |
518 |
Q |
| |
|
|||||||||||||||||| || ||||||||| |||||||||| ||||| | | ||||| |||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
14951050 |
acattggttttttaactcaaaagaggtcaggtatgaaaatgagatcagctctaatggtagcagtttatcaaaagcagctaaagctttcaagctcggcaag |
14950951 |
T |
|
| Q |
519 |
gacaagacactcaaccggcgaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgca |
618 |
Q |
| |
|
|| || ||||| |||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || | |
|
|
| T |
14950950 |
gatgaggcactcggccggagaaattgtgaattacattgcagttgatgcttatagaatgggagaatttccatggtggtttcatatggcatggacttctgta |
14950851 |
T |
|
| Q |
619 |
ttgcaacttgttctgtccattgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
695 |
Q |
| |
|
|||||||||||||| || |||| | | |||||| ||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
14950850 |
ttgcaacttgttctttctattggtgtccttttttttgttgttggtattggtgctcttcctggtttagtccctcttct |
14950774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 20 - 695
Target Start/End: Original strand, 15124217 - 15124892
Alignment:
| Q |
20 |
ctacctttctcagcaagttgattttctcttgggttaattctttactcagtttaggttactcaaagccattagatcttgaagacataccttcccttgcttc |
119 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| ||| |
|
|
| T |
15124217 |
ctacttttcttagcaagttgattttctcttgggttaattcattactcagtttaggttactcaaagccactagctcttgaagacattccttcccttgtttc |
15124316 |
T |
|
| Q |
120 |
tgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagagagaagacaaagaaaaattccaggagcttggttctttgg |
219 |
Q |
| |
|
||||||||||||| ||||| | ||| |||| |||| ||||| ||||| || ||||| ||||||| ||| ||||| ||| | | ||| |||||||||||| |
|
|
| T |
15124317 |
tgaagatgaagcaaacatggcttataaaaaatttgttcatgcttgggaatcacttgttagagagaggactaagaacaatacaaagagtttggttctttgg |
15124416 |
T |
|
| Q |
220 |
tctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgctt |
319 |
Q |
| |
|
||| | ||||| | ||| |||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15124417 |
tctatagttagatcatacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagctgttgtagtttcacctctaatactctatgctt |
15124516 |
T |
|
| Q |
320 |
ttgttaactactcaaatagaactgaggcagatctcaaacaaggtcttttaatagttggttttctgattctcaccaaattagtcgagtctctgtctcaacg |
419 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| || || |||| ||| | | ||||| | |||||| | |
|
|
| T |
15124517 |
ttgttaactactcaaatagaactgaggaagatctcaaacaaggtctttccatagttggttttttggttgtcactaaagtctttgagtcggtatctcaaag |
15124616 |
T |
|
| Q |
420 |
acattggttttttaactcaaggaggtcaggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaagg |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||| | | ||||| |||||||||| |||||||||||||||||| ||| ||||||| |
|
|
| T |
15124617 |
acattggttttttaactcaaggaggtcaggtatgaaaatgagatcagctctaatggtagcagtttatcaaaagcagctaaagctttctagctcggcaagg |
15124716 |
T |
|
| Q |
520 |
acaagacactcaaccggcgaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcat |
619 |
Q |
| |
|
| ||||||||| ||| ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15124717 |
aaaagacactcggtcggagaaattgtgaattacattgcagttgattcttatagaatgggagaatttccatggtggtttcatataacatggacttctgcat |
15124816 |
T |
|
| Q |
620 |
tgcaacttgttctgtccattgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
695 |
Q |
| |
|
|||||||| |||| |||| | |||| ||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15124817 |
tgcaactttttctttccaccagtgttctctttattgttgttggtattggtgctcttcctggtttagtgcctcttct |
15124892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 20 - 695
Target Start/End: Complemental strand, 5292130 - 5291455
Alignment:
| Q |
20 |
ctacctttctcagcaagttgattttctcttgggttaattctttactcagtttaggttactcaaagccattagatcttgaagacataccttcccttgcttc |
119 |
Q |
| |
|
|||| ||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| ||| ||| |
|
|
| T |
5292130 |
ctacttttcttagcaagttgaatttctcttggattaattctttactcagtttaggttactcaaagccgcttgatcttgaagatataccttccgttgtttc |
5292031 |
T |
|
| Q |
120 |
tgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagagagaagacaaagaaaaattccaggagcttggttctttgg |
219 |
Q |
| |
|
|||||||||||| |||||| | |||||||| |||| |||| ||||| || ||||| ||||||| ||||||||| ||| | | ||| |||||||||||| |
|
|
| T |
5292030 |
tgaagatgaagctgacatgtcgtatcaaaaatttgttaatgcttgggaatcacttgtgagagagaggacaaagaataatacaaagagtttggttctttgg |
5291931 |
T |
|
| Q |
220 |
tctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgctt |
319 |
Q |
| |
|
||| | ||||||||| ||| |||||||||||| |||||||||||||||||||| | |||||| |||| |||| |||||||||||| ||||||||||||| |
|
|
| T |
5291930 |
tctatagttagaactttcttgaaagaaaacatattaatagcattttatgcattaataagaactgtttcggttgcagtttcacctcttatactctatgctt |
5291831 |
T |
|
| Q |
320 |
ttgttaactactcaaatagaactgaggcagatctcaaacaaggtcttttaatagttggttttctgattctcaccaaattagtcgagtctctgtctcaacg |
419 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| || |||||||||||||| | | |||||| | |||||| | |
|
|
| T |
5291830 |
ttgttaactactcaaatagaaccgaggcagatctcaaacaaggtctttccatagttggtattttgattctcaccaaagtttttgagtctttatctcaaag |
5291731 |
T |
|
| Q |
420 |
acattggttttttaactcaaggaggtcaggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaagg |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||| ||||| ||||||||| |||||||||| ||| ||||||| |
|
|
| T |
5291730 |
gcattggttttttaactcaaggaggtcaggaatgaaaatgagatcagctcttatggtggcggtttaccgaaagcagttaaagctttctagctcggcaagg |
5291631 |
T |
|
| Q |
520 |
acaagacactcaaccggcgaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcat |
619 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5291630 |
cagagacactcggccggtgaaattgtgaattacattgcagttgatgcatacagaatgggagaatttccatggtggtttcatacaacatggacttgtgcat |
5291531 |
T |
|
| Q |
620 |
tgcaacttgttctgtccattgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
695 |
Q |
| |
|
| |||||| |||| |||||| | | || |||| |||||| ||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
5291530 |
ttcaacttattctttccattagtgtcctctttggtgttgtcggtgttggtgctcttcctggtttagtccctcttct |
5291455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 693
Target Start/End: Complemental strand, 31528132 - 31527459
Alignment:
| Q |
20 |
ctacctttctcagcaagttgattttctcttgggttaattctttactcagtttaggttactcaaagccattagatcttgaagacataccttcccttgcttc |
119 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||| ||||| || |||||||| |||||||||||| ||| |||||||||||||||| |||||| ||| |
|
|
| T |
31528132 |
ctaccttgctcagcaagttagttttctcttgggttaactctttgcttagtttaggatactcaaagccactagctcttgaagacatacctacccttgtttc |
31528033 |
T |
|
| Q |
120 |
tgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagagagaagacaaagaaaaattccaggagcttggttctttgg |
219 |
Q |
| |
|
||||||||||||| ||| | |||||||| |||| ||||| |||||| || |||| ||| ||| || ||||| | | | | | |||||||||||| |
|
|
| T |
31528032 |
tgaagatgaagcaaacactgcgtatcaaaattttgtgcatgaatgggagtctcttggaaggaagaggagtaagaacagtacaaaaaatttggttctttgg |
31527933 |
T |
|
| Q |
220 |
tctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgctt |
319 |
Q |
| |
|
||| | ||| |||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
31527932 |
tctatagttaaaacttacttacaagaaaacatattaatagcattctatgcactactcagaactatttctgttgtagttttacctctaattctctatgctt |
31527833 |
T |
|
| Q |
320 |
ttgttaactactcaaatagaactgaggcagatctcaaacaaggtcttttaatagttggttttctgattctcaccaaattagtcgagtctctgtctcaacg |
419 |
Q |
| |
|
||||||||||||||| |||||| |||| | |||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||| | || || | |
|
|
| T |
31527832 |
ttgttaactactcaagtagaaccgagggaaatctcagagaaggtctttccatagttggttttctgattctcaccaaattagtcgagtctttttcccagag |
31527733 |
T |
|
| Q |
420 |
acattggttttttaactcaaggaggtcaggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaagg |
519 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||| ||| || || | |
|
|
| T |
31527732 |
acattggttttttaactcaaggaggttaggaatgaaaatgagatcagctctgatggtggcagtttatgagaagcagctaaagctttctagctcgggaaag |
31527633 |
T |
|
| Q |
520 |
acaagacactcaaccggcgaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcat |
619 |
Q |
| |
|
| ||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31527632 |
ataagacactcggccggtgaaattgtgaattacattgcagttgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtatac |
31527533 |
T |
|
| Q |
620 |
tgcaacttgttctgtccattgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctctt |
693 |
Q |
| |
|
| ||||||||||||||||||||| | ||||| | |||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
31527532 |
tacaacttgttctgtccattgctgtccttttcggtgttgttggtattggtgctcttcctggtttagtccctctt |
31527459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 254 - 334
Target Start/End: Complemental strand, 21177786 - 21177706
Alignment:
| Q |
254 |
taatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgcttttgttaactactcaa |
334 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21177786 |
taatggcattttatgcattaatcagaactatatctgttttagtttcacctctaatactctatgctattgttaactactcaa |
21177706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 247 - 342
Target Start/End: Complemental strand, 21264026 - 21263930
Alignment:
| Q |
247 |
aacatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgcttttgttaact-actcaaatagaact |
342 |
Q |
| |
|
|||||| ||||||||||||||| |||| |||||||||||||| ||||||||||||||||||| ||||| || ||||| ||| |||||||||||||| |
|
|
| T |
21264026 |
aacatattaatagcattttatgaattaatcagaactatttctattgtagtttcacctctaatcttctattctattgttgactaactcaaatagaact |
21263930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 21197746 - 21197647
Alignment:
| Q |
36 |
gttgattttctcttgggttaattctttactcagtt---taggttactcaaagccattagatcttgaagacataccttcccttgcttctgaagatgaagca |
132 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| |||||||||||||| || ||||||||||||| || |||||||| |||||||||||||||| |
|
|
| T |
21197746 |
gttgattttctcattggttaattctttactcagttaattaggttactcaaagacactagatcttgaagaaatctattcccttgtttctgaagatgaagca |
21197647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 247 - 342
Target Start/End: Complemental strand, 21297880 - 21297785
Alignment:
| Q |
247 |
aacatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgcttttgttaactactcaaatagaact |
342 |
Q |
| |
|
|||||| |||||||| ||||||||| | |||||||||| |||||||||||||||| ||||||| | || || ||||||| ||||||||||||||| |
|
|
| T |
21297880 |
aacatattaatagcagtttatgcataaatcagaactatctctgttgtagtttcacatctaatattatactctattgttaattactcaaatagaact |
21297785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 208 - 315
Target Start/End: Complemental strand, 21260198 - 21260087
Alignment:
| Q |
208 |
ttggttctttggtctgttattagaacttacttaaaa----gaaaacatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacct |
303 |
Q |
| |
|
||||||||||||||| | |||||||||||| |||| ||||||| | ||| || |||||||||||||| |||||||||| ||||||||||| |||| |
|
|
| T |
21260198 |
ttggttctttggtctatagttagaacttactaaaaattaagaaaacacattaaaagtattttatgcattacacagaactattgttgttgtagtttgacct |
21260099 |
T |
|
| Q |
304 |
ctaatactctat |
315 |
Q |
| |
|
|||||||||||| |
|
|
| T |
21260098 |
ctaatactctat |
21260087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 21109210 - 21109146
Alignment:
| Q |
247 |
aacatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatact |
311 |
Q |
| |
|
|||||| |||||||||||||||||||| ||| || || ||||| |||| ||||||||||| |||| |
|
|
| T |
21109210 |
aacatattaatagcattttatgcattaatcataattacttctgctgtaatttcacctctattact |
21109146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 19962 - 19913
Alignment:
| Q |
293 |
tagtttcacctctaatactctatgcttttgttaactactcaaatagaact |
342 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
19962 |
tagtttcacctctaatactctatactattgttaactaatcaaatagaact |
19913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 39775 - 39824
Alignment:
| Q |
293 |
tagtttcacctctaatactctatgcttttgttaactactcaaatagaact |
342 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
39775 |
tagtttcacctctaatactctatactattgttaactaatcaaatagaact |
39824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 61275 - 61327
Alignment:
| Q |
209 |
tggttctttggtctgttattagaacttacttaaaagaaaacatagtaatagca |
261 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||||||||||||| |||||||| |
|
|
| T |
61275 |
tggttctttggtttgtagttagaactaacttaaaagaaaacataataatagca |
61327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 48737 - 48774
Alignment:
| Q |
305 |
taatactctatgcttttgttaactactcaaatagaact |
342 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
48737 |
taatactctatgctattgtcaactactcaaatagaact |
48774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0719 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0719
Description:
Target: scaffold0719; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 5889 - 5840
Alignment:
| Q |
293 |
tagtttcacctctaatactctatgcttttgttaactactcaaatagaact |
342 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
5889 |
tagtttcacctctaatactctaaactattgttaactaatcaaatagaact |
5840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0719; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 5951 - 5899
Alignment:
| Q |
209 |
tggttctttggtctgttattagaacttacttaaaagaaaacatagtaatagca |
261 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||||||||||||| |||||||| |
|
|
| T |
5951 |
tggttctttggtctctagttagaactaacttaaaagaaaacataataatagca |
5899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 11831754 - 11831689
Alignment:
| Q |
279 |
aactatttctgttgtagtttcacctctaatactcta--tgcttttgttaactactcaaatagaact |
342 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| || |||| |||||||||| | | |||||||| |
|
|
| T |
11831754 |
aactatttctattgtagtttcacctctaatactatatgtgctattgttaactaattacatagaact |
11831689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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