View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12767_low_20 (Length: 390)
Name: NF12767_low_20
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 38969673 - 38969334
Alignment:
| Q |
11 |
cagagacagctggtttattttgtgttccataaagcaatcaacattcaacaggcttctatctttaaggagacaactagtacttaactgctgttaattaatg |
110 |
Q |
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| T |
38969673 |
cagagacagctggtttattttgtgttccataaagcaatcaacattcaacaggcttctatctttaaggagacaactagtacttaactgctgttaattaatg |
38969574 |
T |
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| Q |
111 |
aaatcttcaagttcatgcaactcttttcctttcaccactgacttcaacctggctgtaaaaataacttctaaaatttggtccattggtttctcttttgttt |
210 |
Q |
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| T |
38969573 |
aaatcttcaagttcatgcaactcttttcctttcaccactgacttcaacctggctgtaaaaataacttctaaaatttggtccattggtttctcttttgttt |
38969474 |
T |
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| Q |
211 |
tttgtcatttgttaaataaattttcaaaataaggaacttagatgtctttacactaatagttagtggtgtttgctataactggtattacctctactatttt |
310 |
Q |
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| T |
38969473 |
tttgtgatttgttaagtaaattttcaaaataaggaacttagatgtctttacactaatagttagtggtttttgctataactggtattacctctacta-ttc |
38969375 |
T |
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| Q |
311 |
gatggcatcatcaattatagtagaattcttttcagtggctc |
351 |
Q |
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| T |
38969374 |
gatggcattatcaattatagtagaattcttttcagtggctc |
38969334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 50887461 - 50887410
Alignment:
| Q |
258 |
ttacactaatagttagtggtgtttgctataactggtattacctctactattt |
309 |
Q |
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| T |
50887461 |
ttacactaatagttagtgggttttgctatagctagtattacctctactattt |
50887410 |
T |
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