View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12767_low_25 (Length: 344)
Name: NF12767_low_25
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 27201676 - 27201856
Alignment:
| Q |
15 |
cataggcaagtggttgatcttcagcaagcagctatttggagatttctttggtggtctggcactatttcaattaatgttttggtcgatcaaaacagaaatg |
114 |
Q |
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| T |
27201676 |
cataggcaagtggttgatcttcagcaagcagctatttggagatttctttggtggtctggcactatttcaattaatgttttggtcgatcaaaacagaaatg |
27201775 |
T |
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| Q |
115 |
attactctgtaaggatctgtccctttttcttataatgaatggattccatatttgaggcacttataaagttacctctcttaa |
195 |
Q |
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| T |
27201776 |
attactctgtaaggatctatccctttttcatacaatgaatggattccatatttgaggcacatataaagttacctctcttaa |
27201856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 195 - 330
Target Start/End: Original strand, 27201880 - 27202015
Alignment:
| Q |
195 |
aagcaaatgattgttattgttgttactgacatttaccaactacctaaaattgaagaatatgtccagaatttcaattaatcaacacacattcatttaaagg |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27201880 |
aagcaaatgattgttattgttgttactgacatttaccaactacctaaaattgaagaatatgtctagaatttcaattaatcaacacacattcatttaaagg |
27201979 |
T |
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| Q |
295 |
cgaacgctagtaattagttgttagatatgttataat |
330 |
Q |
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| T |
27201980 |
cgaacgctagtaattagttgttagatatgttataat |
27202015 |
T |
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