View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12767_low_27 (Length: 293)
Name: NF12767_low_27
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 17455869 - 17456051
Alignment:
| Q |
19 |
gaactgaaaagcagggaatgaagcatgtgtgtagccattgattacctgtaggaagtcatgacttcaggatctcttaaaagcctttttcggcacaatacat |
118 |
Q |
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| T |
17455869 |
gaactgaaaa--agggaatgaagtatgcgcgtggtcattgattacctgtag-aagtcatgatttcaggatctcttaaaagccgttgtcggcacaaaacat |
17455965 |
T |
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| Q |
119 |
tgacaacgaggaggtatggaagctgccacaaaacgtaagctgctaagggtaccagaaacatccatgtccaaatataggatttatct |
204 |
Q |
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| T |
17455966 |
taacaatgaggaggtatagaagctgccacagaatgtaagctgctaagggtaccagaaacatccatgtccaaatataggatttatct |
17456051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 17805256 - 17805419
Alignment:
| Q |
59 |
attacctgtaggaagtcatgacttcaggatctcttaaaagcctttttcggcacaatacattgacaacgaggaggtatggaagctgccacaaaacgtaagc |
158 |
Q |
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| T |
17805256 |
attacctataggaagtcatgacttcgggatctcttaaaaaccgttgtcggcgtaagacattgacaatgaggtagtatagaacctgccacaaggtgtaaac |
17805355 |
T |
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| Q |
159 |
tgctaagggtaccagaaacatccatgtccaaatataggatttatcttcaacataaggccatgta |
222 |
Q |
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| T |
17805356 |
tactaagggaaccagaaacagccatgtacatagataggatttatcttcaatataaggccatgta |
17805419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 59 - 222
Target Start/End: Complemental strand, 52142729 - 52142566
Alignment:
| Q |
59 |
attacctgtaggaagtcatgacttcaggatctcttaaaagcctttttcggcacaatacattgacaacgaggaggtatggaagctgccacaaaacgtaagc |
158 |
Q |
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| T |
52142729 |
attacctgtaggatgtcatgacttcaggatctcttaaaagcctttgtcggcgtaagacattgacaatgaggaagtatagaacctgccacagaatgtaagc |
52142630 |
T |
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| Q |
159 |
tgctaagggtaccagaaacatccatgtccaaatataggatttatcttcaacataaggccatgta |
222 |
Q |
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| T |
52142629 |
tactaagggaaccagaaacagccatgtccaaagataggatttatcttcaacataaggccatgta |
52142566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 52142534 - 52142498
Alignment:
| Q |
227 |
cttcaaaggtagcaggattccaccacctaatggtaaa |
263 |
Q |
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| T |
52142534 |
cttcaaaagtagcaggattccaccatctaatggtaaa |
52142498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 775356 - 775479
Alignment:
| Q |
56 |
ttgattacctgtaggaagtcatgacttcaggatctcttaaaagcctttttcggcacaatacattgacaacgaggaggtatggaagctgccacaaaacgta |
155 |
Q |
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| T |
775356 |
ttgattacctataggaagtcatgacttcaggatctcttaaaagccgttttcggcacaagacattaacaatgaggaggtatagaagctgccacataatgta |
775455 |
T |
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| Q |
156 |
agctgctaagggtaccagaaacat |
179 |
Q |
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| T |
775456 |
agctgctaagggtaccagaaacat |
775479 |
T |
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