View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12767_low_29 (Length: 273)
Name: NF12767_low_29
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_low_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 2815882 - 2816127
Alignment:
| Q |
19 |
agagaatcctcaactcaaatctaaacaaatgtacaatctaaacttcatcaatcaaatcatggaaccnnnnnnnngagaactatttggaatcaactcaagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2815882 |
agagaatcctcaactcaaatctaaacaaatgtacaatctaaacttcatcaatcaaatcatggaaccaaaaaaaagagaactatttggaatcaactcaagt |
2815981 |
T |
|
| Q |
119 |
atattccaattcaaaaactttcttgattttttcttatttggacaaagataagataaccatcatcgttagatatgcgggattgacttagaccgaataaggt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2815982 |
atattccaattcaaaaactttcttgattttttcttatttggacaaagataagataaccatcatcgttagatatgcgggattgacttagaccgaataagat |
2816081 |
T |
|
| Q |
219 |
ttttaagtagagctttctcttcatcaattttctgtttctcctttgc |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2816082 |
ttttaagtagagctttctcttcatcaattttctgtttctcctttgc |
2816127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 5436111 - 5436216
Alignment:
| Q |
155 |
tttggacaaagataagataaccatcatcgttagatatgcgggattgacttagaccgaataaggtttttaagtagagctttctcttcatcaattttctgtt |
254 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||| ||||| || || |||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
5436111 |
tttggacaaagataggagaaacatcatcgttagatacttgggatagattttgaccgaataaggtttttaagaagagctttctcttcatcaattctctgtt |
5436210 |
T |
|
| Q |
255 |
tctcct |
260 |
Q |
| |
|
|||||| |
|
|
| T |
5436211 |
tctcct |
5436216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 5428868 - 5428952
Alignment:
| Q |
176 |
catcatcgttagatatgcgggattgacttagaccgaataaggtttttaagtagagctttctcttcatcaattttctgtttctcct |
260 |
Q |
| |
|
||||||| ||||||| ||||| || || || |||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
5428868 |
catcatccttagatacttgggatggattttgatcgaataaggtttttaagtagagctttctcttcttcaattttccgtttctcct |
5428952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University