View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12767_low_3 (Length: 707)

Name: NF12767_low_3
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12767_low_3
NF12767_low_3
[»] chr2 (1 HSPs)
chr2 (16-689)||(102955-103628)


Alignment Details
Target: chr2 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 16 - 689
Target Start/End: Complemental strand, 103628 - 102955
Alignment:
Q  16 aagcaaagggccatgagactctaggcaaaaatcgaactatagaagatattgaaaaaccacaacacctgaagcctatcatctttcagggtagataatcaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  103628 aagcaaagggccatgagactctaggcaaaaatcgaactatagaagatattgaaaaaccacaacacctgaagcctatcatctttcagggtagataatcaaa 103529  T
Q  116 catcattatatcaaacaagccctctacgttggtgctgtcacgctcctccagcataggttgtgtagaataaaccaatgatatgctcctatagaccacgatg 215  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  103528 catcattatattaaacaagccctctacgttggtgctgtcacgctcctccagcataggttgtgtagaataaatcaatgatatgctcctatagaccacgatg 103429  T
Q  216 aaatgtttgcgaggttcattctcttacgttctacttcctaatttcatgccaatatttattgtacataacaactagtgagttggaagacctaggagcatta 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  103428 aaatgtttgcgaggttcattctcttacgttctacttcctaatttcatgccaatatttattgtacataacaactagtgagttggaagacctaggagcatta 103329  T
Q  316 gcaaccaggccccacaatagatgaccggtcctcgggattgacaactgcttcagaatccagtttgcttggtttaccttcttcattgctcggaagacctatt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  103328 gcaaccaggccccacaatagatgaccggtcctcgggattgacaactgcttcagaatccagtttgcttggtttaccttcttcattgctcggaagacctatt 103229  T
Q  416 ttcggtgaaagcttcttcacctcctctggtgtgtagatgaacattttcctcacaacgctacaaaattcactgcagtaaaacagccagatagaactcaaca 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  103228 ttcggtgaaagcttcttcacctcctctggtgtgtagatgaacattttcctcacaacgctacaaaattcactgcagtaaaacagccagacagaactcaaca 103129  T
Q  516 tgtatataaaattgcaaactactatgctacatatgatggcgtcaaagagaataaatgttattaataggatcaaataatcttacagccacggatcatcccc 615  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  103128 tgtatataaaattgcaaactattatgctacatatgatggcgtcaaagagaatatatgttattaataggatcaaataatcttacagccacggatcatcccc 103029  T
Q  616 aaccatcatcatatcatcttcattgtcagtgtaaactaccagccannnnnnngttgctccacagagctcaccct 689  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  103028 aaccatcatcatatcatcttcattgtcagtgtaaactaccagccatttttttgttgctccacagagctcaccct 102955  T

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