View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12767_low_30 (Length: 270)
Name: NF12767_low_30
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 21 - 252
Target Start/End: Original strand, 46795538 - 46795766
Alignment:
| Q |
21 |
caaaatttggaattggaaaactactagtaacaccaaagttgtagccattatcttgttcaaacattgcagtgttgttacaatctgcaaaattagcatcagg |
120 |
Q |
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| T |
46795538 |
caaaatttggaattggaaaactactagtaacaccaaagttgtagccattatcttgttcaaacattgcagtgttgttacaatctgcaaaattagtatcagg |
46795637 |
T |
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| Q |
121 |
gaatggaacaacatcatgatgtgttgatgtagtgaaaggaatagaaagtagtgaatcatcaagaagagtagtattgttatttggaaaatcattattttca |
220 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46795638 |
gaatggaacaacatcatgatgtgttgat---gtgaaaggaatagaaagtagtgaatcatcaagaagagtagtattgttatttggaaaatcattattttca |
46795734 |
T |
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| Q |
221 |
ggattgtcaatgagaaaagaaagggtactatt |
252 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
46795735 |
ggattgtcaatgagaaaagaaagggtactatt |
46795766 |
T |
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