View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12767_low_31 (Length: 267)
Name: NF12767_low_31
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 39930877 - 39931116
Alignment:
| Q |
18 |
ctatagacacaatgtgcattctaaattttcaataagacatgaccaaagaaggagcaaaagggctataaatcataattattcttgagccattactattgac |
117 |
Q |
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| T |
39930877 |
ctatagacacaatgtgcattctaaattttcaataagacatgaccaaagaaggagcaaaagggctataaatcataattattcttgagccattactattgac |
39930976 |
T |
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| Q |
118 |
attaaagaactcgttcatctttcaaagcctagcataacttgttagatgaaattttccaggtggaaagcaaatgtaaaggaattttaagtatatattaaca |
217 |
Q |
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| T |
39930977 |
agtaaagaactcgttcatctttcaaagcctagcataacttgttagatgaaattttccaggtggaaagcaaatgtaaaggaatttaaagtatatattaaca |
39931076 |
T |
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| Q |
218 |
aagtattccagcatgccatgctaactaattaacagtgaac |
257 |
Q |
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| T |
39931077 |
aagtattccagcatgccatgctaactaattaacaatgaac |
39931116 |
T |
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Back To:
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 3237642 - 3237447
Alignment:
| Q |
18 |
ctatagacacaatgtgcattctaaattttcaataagacatgaccaaagaaggagcaaaagggctataaatcataa----ttattcttgagccattacta- |
112 |
Q |
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||||| ||||||||||||||||||||||||||| ||| | |||||| |||||| |||| ||||||||| | | |||||||||||| | ||||| |
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| T |
3237642 |
ctatacacacaatgtgcattctaaattttcaatctgac-taaccaaaagaggagctaaagtgctataaattgtgactcgttattcttgagcaactactat |
3237544 |
T |
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| Q |
113 |
ttgaca-ttaaagaactcgttcatctttcaaagcctagcataact--tgttagatgaaattttccaggtggaaagcaaatgtaaaggaattttaagtat |
208 |
Q |
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| T |
3237543 |
ttgacagtaaaagaactcattcaacattc-aagcctagcataacttctgtgagatg-aattttcaaggtgcaaagcaaatgtacagaaatttaaagtat |
3237447 |
T |
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