View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12767_low_32 (Length: 264)

Name: NF12767_low_32
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12767_low_32
NF12767_low_32
[»] chr6 (3 HSPs)
chr6 (14-264)||(3543284-3543536)
chr6 (14-88)||(3530251-3530325)
chr6 (196-234)||(387840-387878)
[»] chr2 (3 HSPs)
chr2 (195-262)||(15269283-15269350)
chr2 (195-234)||(11922058-11922097)
chr2 (195-262)||(34375134-34375201)
[»] chr8 (4 HSPs)
chr8 (195-262)||(13629007-13629074)
chr8 (195-262)||(13729419-13729486)
chr8 (200-262)||(1155112-1155174)
chr8 (195-234)||(31226440-31226479)
[»] chr7 (2 HSPs)
chr7 (196-262)||(47841393-47841459)
chr7 (195-262)||(19987246-19987313)
[»] chr1 (3 HSPs)
chr1 (195-234)||(42831760-42831799)
chr1 (195-262)||(49003335-49003401)
chr1 (195-255)||(47364416-47364476)
[»] chr4 (3 HSPs)
chr4 (200-234)||(27923166-27923200)
chr4 (201-262)||(39055248-39055309)
chr4 (197-262)||(44539992-44540057)
[»] chr5 (1 HSPs)
chr5 (200-248)||(12593226-12593274)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 264
Target Start/End: Complemental strand, 3543536 - 3543284
Alignment:
Q  14 tctcctttgctcttgacctacctagaatgtaccaaagttttcaaatttaatgaaatctcttgtctacttataaaggtagtgtagtgtgt--tacatggaa 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  3543536 tctcctttgctcttgacctacctagaatgtaccaaacttttcaaatttaatgaaatctcttgtctacttataaaggtagtgtagtgtgtgttacatggaa 3543437  T
Q  112 caatggattaagaagcatagaaaatttcaaataaaagttagtaatatgaaattaatatattttggctttttggtgatattttttcacatgtacacattac 211  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  3543436 caatggattaagaagcataggaaagttcaaataaaagttagtaatatgaaattaatatgttttggctttttggtgatattttttcacgtgtacacattac 3543337  T
Q  212 tcatttataaatttttaatagtattataaaataagtatttaatccctccaatt 264  Q
    |||||||||||||||||||||||||||  || ||||| |||||||||||||||    
T  3543336 tcatttataaatttttaatagtattatctaacaagtacttaatccctccaatt 3543284  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 3530325 - 3530251
Alignment:
Q  14 tctcctttgctcttgacctacctagaatgtaccaaagttttcaaatttaatgaaatctcttgtctacttataaag 88  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||| | | ||||| ||||||||| |||||||    
T  3530325 tctcctttgctcttgacctaccaagaatgtaccaaaattttcaaattaattaaaatcacttgtctacatataaag 3530251  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 387878 - 387840
Alignment:
Q  196 cacatgtacacattactcatttataaatttttaatagta 234  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  387878 cacatgtacacataactcatttataattttttaatagta 387840  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 15269350 - 15269283
Alignment:
Q  195 tcacatgtacacattactcatttataaatttttaatagtattataaaataagtatttaatccctccaa 262  Q
    ||||||||||||||||||||||||||| |||||||||||| |    |||||||||| |||||||||||    
T  15269350 tcacatgtacacattactcatttataattttttaatagtagtgcctaataagtattcaatccctccaa 15269283  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 11922097 - 11922058
Alignment:
Q  195 tcacatgtacacattactcatttataaatttttaatagta 234  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  11922097 tcacgtgtacacattactcatttataattttttaatagta 11922058  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 34375201 - 34375134
Alignment:
Q  195 tcacatgtacacattactcatttataaatttttaatagtattataaaataagtatttaatccctccaa 262  Q
    |||||||||||||| ||| |||||||| |||||||||||| ||   |||||| ||| |||||||||||    
T  34375201 tcacatgtacacatcacttatttataattttttaatagtagtacctaataagaattcaatccctccaa 34375134  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 13629007 - 13629074
Alignment:
Q  195 tcacatgtacacattactcatttataaatttttaatagtattataaaataagtatttaatccctccaa 262  Q
    |||||||||||||| | |||||||||| |||||||||||| |||  |||||||| | |||||||||||    
T  13629007 tcacatgtacacatcattcatttataattttttaatagtagtatctaataagtagtcaatccctccaa 13629074  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 13729419 - 13729486
Alignment:
Q  195 tcacatgtacacattactcatttataaatttttaatagtattataaaataagtatttaatccctccaa 262  Q
    |||||||||||||| | |||||||||| |||||||||||| |||  |||||||| | |||||||||||    
T  13729419 tcacatgtacacatcattcatttataattttttaatagtagtatctaataagtagtcaatccctccaa 13729486  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 1155112 - 1155174
Alignment:
Q  200 tgtacacattactcatttataaatttttaatagtattataaaataagtatttaatccctccaa 262  Q
    ||||||||| |||||||||||| |||||||||||| |||  |||||| ||| |||||||||||    
T  1155112 tgtacacatcactcatttataattttttaatagtagtatctaataagcattcaatccctccaa 1155174  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 31226440 - 31226479
Alignment:
Q  195 tcacatgtacacattactcatttataaatttttaatagta 234  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  31226440 tcacatgtacacatcactcatttataattttttaatagta 31226479  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 47841393 - 47841459
Alignment:
Q  196 cacatgtacacattactcatttataaatttttaatagtattataaaataagtatttaatccctccaa 262  Q
    ||||||||||||| |||||||||||| ||| |||||||| |||  |||||||| | |||||||||||    
T  47841393 cacatgtacacataactcatttataattttgtaatagtagtatttaataagtactcaatccctccaa 47841459  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 19987313 - 19987246
Alignment:
Q  195 tcacatgtacacattactcatttataaatttttaatagtattataaaataagtatttaatccctccaa 262  Q
    |||||||||||||| | |||||||||| |||||||||||| || | ||||||||  | ||||||||||    
T  19987313 tcacatgtacacatcattcatttataattttttaatagtagtacataataagtacatgatccctccaa 19987246  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 42831799 - 42831760
Alignment:
Q  195 tcacatgtacacattactcatttataaatttttaatagta 234  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  42831799 tcacatgtacatattactcatttataattttttaatagta 42831760  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 49003335 - 49003401
Alignment:
Q  195 tcacatgtacacattactcatttataaatttttaatagtattataaaataagtatttaatccctccaa 262  Q
    ||||||||||||||||||| ||||||| |||||||||||| ||   |||||||||| |||| ||||||    
T  49003335 tcacatgtacacattactc-tttataattttttaatagtaatacctaataagtattcaatctctccaa 49003401  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 47364476 - 47364416
Alignment:
Q  195 tcacatgtacacattactcatttataaatttttaatagtattataaaataagtatttaatc 255  Q
    |||| ||| |||||||||||||||||| |||| ||||||| |||| ||||| || ||||||    
T  47364476 tcacgtgttcacattactcatttataatttttaaatagtagtatataataaatacttaatc 47364416  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 27923200 - 27923166
Alignment:
Q  200 tgtacacattactcatttataaatttttaatagta 234  Q
    ||||||||||| |||||||||||||||||||||||    
T  27923200 tgtacacattattcatttataaatttttaatagta 27923166  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 39055309 - 39055248
Alignment:
Q  201 gtacacattactcatttataaatttttaatagtattataaaataagtatttaatccctccaa 262  Q
    |||||||| |||||||||||| ||||||||| || ||   |||||||||| |||||||||||    
T  39055309 gtacacatcactcatttataattttttaatattagtacctaataagtattaaatccctccaa 39055248  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 44540057 - 44539992
Alignment:
Q  197 acatgtacacattactcatttataaatttttaatagtattataaaataagtatttaatccctccaa 262  Q
    ||||| |||||| ||||||||||||||||||||||| | |||  |||||  |||| ||||||||||    
T  44540057 acatgcacacatcactcatttataaatttttaatagcagtatctaataaacatttgatccctccaa 44539992  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 12593274 - 12593226
Alignment:
Q  200 tgtacacattactcatttataaatttttaatagtattataaaataagta 248  Q
    ||||||||| |||||||||||| |||||||||||| |||  ||||||||    
T  12593274 tgtacacatcactcatttataactttttaatagtagtatctaataagta 12593226  T

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