View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12767_low_5 (Length: 573)
Name: NF12767_low_5
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 97 - 562
Target Start/End: Original strand, 14167966 - 14168430
Alignment:
| Q |
97 |
tagcagcataaacattcagctaagctaggttacaaataagcattggatattaaagaatttgtacttgtgcttcaataatttataagcatcaagtagctga |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14167966 |
tagcagcataaacattcagctaagctaggttacaaataagcattggatattaaagaatttgtacttgtgcttcaataatttataagcatcaagtagctga |
14168065 |
T |
|
| Q |
197 |
cacacattgcaagttcacaactgtaatgaaaattgaagaatacaactatgaacaagcgctccaagttctaaccccgtcataatgaaataactcagttaaa |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
14168066 |
cacacattgcaagttcacaactgtaatgaaaattgaagaatacaactatgaacaagtgctccaagttcta-ccccatcataatgaaataactcagttaaa |
14168164 |
T |
|
| Q |
297 |
ttaattgcaacttagacaggtttaacacgagtacttgaatatgggatgaagaaacattaagatgttgaattacacaaaatgtgtgcttagaagttaacca |
396 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14168165 |
ttaattgcaacttagacaggtttaacacaagtacttgaatatgggatgaagaaacattaagatgttgaattacacaaaatgtgtgcttagaagttaacca |
14168264 |
T |
|
| Q |
397 |
ttcaacagcttccagatgctagaccgtcctccctgatttttcaaacacccattttttctaggtataacttcaacaaatcatcgctttcctccttaaaaca |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14168265 |
ttcaacagcttccagatgctagaccgtcctccctgatttttcaaacacccattttttctaggtataactttaacaaatcatcgctttcctccttaaaaca |
14168364 |
T |
|
| Q |
497 |
ctgcacatacttttcaagaaacacatcttcattaacaccaaatggagtagacaattcaatattctt |
562 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14168365 |
ctgcacatacttttcaagaaacacattttcattaacaccaaatggagtagacaattcaatattctt |
14168430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 37011780 - 37011841
Alignment:
| Q |
17 |
ctttgtaacagcttggcttttttgcacctctggtgcttgcccttattaatatatgccgattc |
78 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37011780 |
ctttgtaacagcttgacttttttgcacccctggtgcttgcccttattaatatatgccgattc |
37011841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 19524435 - 19524374
Alignment:
| Q |
17 |
ctttgtaacagcttggctttttt-gcacctctggtgcttgcccttattaatatatgccgatt |
77 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
19524435 |
ctttgtaacagcttggctttttttgcacttctggtgcttgcccttattaatatatgcagatt |
19524374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University