View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12767_low_6 (Length: 570)
Name: NF12767_low_6
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 555
Target Start/End: Complemental strand, 39034472 - 39033921
Alignment:
| Q |
19 |
tattattcaatatatgaacttgattttatggagtttccaatgcagaaatattacaaaggtcaagttgattatca---------------atgaatactgg |
103 |
Q |
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| T |
39034472 |
tattattcaatatatgaacttgattttatggagtttccaatgcagaaatattacaaagatcaagttgattatcacatccagcatactcaatgaatactgg |
39034373 |
T |
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| Q |
104 |
tttatcaatggcattacttcgaccttcatctttcatgattttgctggtacgtctttatatgtata----cgttcatgctannnnnnnnncatggttcctc |
199 |
Q |
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| T |
39034372 |
tttatcaatggcattacttcgaccttcatctttcatgattttgctggtacgtctttatatgtatacatacgttcatgctatttttttt-catg-ttcctc |
39034275 |
T |
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| Q |
200 |
agcactcnnnnnnnnnnnnnnnatttgatttgtaacaaagattaagaaacaattgagatttgttattgatgtcttcaactagaagtatacatagctacac |
299 |
Q |
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| T |
39034274 |
agcactctttattttctttg--atttgatttgtaacaaagattaagaaacaattgagatttgttattgatgtcttcaactagaagtatacatagctacac |
39034177 |
T |
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| Q |
300 |
ataaatttacgatattatttgttgtgttattgtaggcatatggtgcactaattgtccttgcttcattgacaccatgctggtatctcatggtcacacatat |
399 |
Q |
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| T |
39034176 |
ataaatttacgatattatttgttgtgttattgtaggcatatggtgcattaattgtccttgcttctttgacaccatgctggtatctcatggtcacacatat |
39034077 |
T |
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| Q |
400 |
tgagaaaagtgtgaatttgcactcagcaaatattgtgtcacaattgcaatcagaaattgagtactcagctgaactattgcatccaatgaaatcatcatca |
499 |
Q |
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| T |
39034076 |
tgagaaaagtgtgaatttgcactcagcaaatattgtgtcacaattgcaatcagaaattgagtactcagctgaactattgcatccaatgaaatcatcatca |
39033977 |
T |
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| Q |
500 |
acaaatttatctacattattgagctcaacccttaattctactaatatcaccttctc |
555 |
Q |
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| T |
39033976 |
acaaatttatctacattattgagctcaacccttaattctactaatatcaccttctc |
39033921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 329 - 543
Target Start/End: Complemental strand, 40899594 - 40899380
Alignment:
| Q |
329 |
ttgtaggcatatggtgcactaattgtccttgcttcattgacaccatgctggtatctcatggtcacacatattgagaaaagtgtgaatttgcactcagcaa |
428 |
Q |
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| T |
40899594 |
ttgtaggcatatggtgcactgataactcttatctcattgacaccatgttggtatgtcatggtaacacatatcgagaaacaagcgaatttgagctcagaaa |
40899495 |
T |
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| Q |
429 |
atattgtgtcacaattgcaatcagaaattgagtactcagctgaactattgcatccaatgaaatcatcatcaacaaatttatctacattattgagctcaac |
528 |
Q |
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| T |
40899494 |
atattgtaacccaactccaatcagaaattaagtactcagctgaactgttgcacccgatgaaatcatcatcgacaaatttagcaagattgttgagttcaag |
40899395 |
T |
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| Q |
529 |
ccttaattctactaa |
543 |
Q |
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||| |||||||||| |
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| T |
40899394 |
acttgattctactaa |
40899380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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