View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12767_low_7 (Length: 542)
Name: NF12767_low_7
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_low_7 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 542
Target Start/End: Complemental strand, 16297551 - 16297020
Alignment:
| Q |
11 |
cagagatattcggtttctgcgattgattggcatctcttgaatgtggaaaacttgatacagatccaccttcaattccattcagagatacaacatctgcaga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16297551 |
cagagatattcggtttctgcgattgattggcatctcttgaatgtggaaaacttgatacagatccgccttcaattccattcagagatacaacatctgcaga |
16297452 |
T |
|
| Q |
111 |
tattaattgtattttaacgatttagtttat-tatataccggtcaatcaatcataactatcagatcattaaaaaacgtatgatttcattgacagtgtnnnn |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| |||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
16297451 |
tattaattgtattttaacgatttagtttatgtatacaccagtcaatcaatcataactatccgatcattaaaaa-cgtttgattttattgacagtgtaaaa |
16297353 |
T |
|
| Q |
210 |
nnntttaaaccggcagtgtatcaaaattaaactcttagtttattgttccataaatcaaggaggttgtaagaaaaatattcaaaatcataccatcaggaac |
309 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16297352 |
ctttttaaacccgcagtgtatcaaaattaaactcttagtttattgttccataaatcaaggaggttgtaagaaaaatattcaaaatcataccatcaggaac |
16297253 |
T |
|
| Q |
310 |
actctggtaatcatcatcgcagtcagaatcaaatacagtaactgaatcaaaccatgcctctccaatgcttcctgcaaacacaaatttaaaatatcataca |
409 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16297252 |
actctggtaatcatcatcacagtcagaatcaaatacagtaactgaatcaaaccatgcctcttcaatgcttcctgcaaacacaaatttaaaatatcataca |
16297153 |
T |
|
| Q |
410 |
aaattcaactaagatatgatgaaaaataaattatgcattaaatgatgaaacagattcacatggccnnnnnnncttaaaatattacattaactggtcaata |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
16297152 |
aaattcaactaagatatgatgaaaaataaattatgcattaaatgatgaaacagattcacatggccaaaaaaaattaaaatattatattaactggtcaata |
16297053 |
T |
|
| Q |
510 |
gtgatagatatcaacataagaatttaatattac |
542 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |
|
|
| T |
16297052 |
gtgatagatatcataataagaatttaatattac |
16297020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University