View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12767_low_8 (Length: 507)
Name: NF12767_low_8
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Original strand, 19112188 - 19112663
Alignment:
| Q |
19 |
gactatccctaaaacaatataaatcatcatcgagtcactgttggaatgctaatgtcaacaatatgatcaagaaataaaggattcaacttcaactctagaa |
118 |
Q |
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| T |
19112188 |
gactatccctgaaacattataaatcatcatcaagtcactgttggaatgctattgtcaacaataggatcaagaaataaaggattcaacttcaactctagaa |
19112287 |
T |
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| Q |
119 |
ccttaaaatcactgatcctacaaaacatgtttcacataatttcttttaaaagtcaaaatgccatgcattatatcaaaactaagtttctgttaggattccc |
218 |
Q |
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| T |
19112288 |
ccttaaaagcactgaacctacaaaacaagtttcacataatttctcttaaaagtctaaatgctctgcattatatcaacactaagtttctcttacgtttccc |
19112387 |
T |
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| Q |
219 |
gtttgctaaccacagactcacgctttcgatgcgtttccacagcaaaatcctgaagctacaaattgaagcgcctgattttcgtgtatttgataggaaaacc |
318 |
Q |
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| T |
19112388 |
atttgctatccacagactcacgctttcgatgcgtttccacagcaaaatcctgaagctacaaattgaagcgcctgattttcgtgtatttgataggaaaacc |
19112487 |
T |
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| Q |
319 |
aacaccaacatggttccaaacgtatatatactaaggccaagtttagactagcttgttgcttaagggagcttcgcaataaaaataggttcctaatgcaatt |
418 |
Q |
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| T |
19112488 |
aacatcaacatggttccaaacatatatatactaaggccaagtttagactagcttgttgcttaagggagcttcgcaataaaaataggttcctaatgcaatt |
19112587 |
T |
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| Q |
419 |
tcaacttggaaattatgaagctacaaatatgagcttttgctttgatgtgattttttaacttgattttccttgatgt |
494 |
Q |
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| T |
19112588 |
tcaacttggaaattatgaagctacaaatatgagcttttgctttgatgtgattttttaacgtgattttccttgatgt |
19112663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 410 - 485
Target Start/End: Original strand, 47609127 - 47609202
Alignment:
| Q |
410 |
aatgcaatttcaacttggaaattatgaagctacaaatatgagcttttgctttgatgtgattttttaacttgatttt |
485 |
Q |
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| T |
47609127 |
aatgcaatttcaatgtggaaactatgaagctacaaatacaagcttttgctttgatgtgaatttttaacgtgatttt |
47609202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 405 - 494
Target Start/End: Complemental strand, 36903716 - 36903627
Alignment:
| Q |
405 |
ttcctaatgcaatttcaacttggaaattatgaagctacaaatatgagcttttgctttgatgtgattttttaacttgattttccttgatgt |
494 |
Q |
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| T |
36903716 |
ttcccaatgcaattttaatttggaaattatgaagctacaaatataagcttttgctttgatgtgattttctaacgtgattttgtttgatgt |
36903627 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 412 - 491
Target Start/End: Complemental strand, 19155113 - 19155034
Alignment:
| Q |
412 |
tgcaatttcaacttggaaattatgaagctacaaatatgagcttttgctttgatgtgattttttaacttgattttccttga |
491 |
Q |
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| T |
19155113 |
tgcaatttcaacgtggaaactatgaagctataattataagcttttgctttgatgtgaatttttaacgtaatttttcttga |
19155034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 410 - 482
Target Start/End: Original strand, 20909217 - 20909287
Alignment:
| Q |
410 |
aatgcaatttcaacttggaaattatgaagctacaaatatgagcttttgctttgatgtgattttttaacttgat |
482 |
Q |
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| T |
20909217 |
aatgcaattttaacttg-aaattatga-gctacaaatataagcttttcctttgatgtgattttttaacgtgat |
20909287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 419 - 492
Target Start/End: Original strand, 11016847 - 11016920
Alignment:
| Q |
419 |
tcaacttggaaattatgaagctacaaatatgagcttttgctttgatgtgattttttaacttgattttccttgat |
492 |
Q |
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| T |
11016847 |
tcaacttgaaaattatgaagctacaaatattagcttttgctttgatgtgatttttgaacgtgattttgcttgat |
11016920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 410 - 494
Target Start/End: Complemental strand, 13876863 - 13876779
Alignment:
| Q |
410 |
aatgcaatttcaacttggaaattatgaagctacaaatatgagcttttgctttgatgtgattttttaacttgattttccttgatgt |
494 |
Q |
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| T |
13876863 |
aatgcaattttaatttggaaattatgaagttacaaatataagcttttgcttttatatgattttttaacgtgattttgtttgatgt |
13876779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 476
Target Start/End: Complemental strand, 33765103 - 33765041
Alignment:
| Q |
414 |
caatttcaacttggaaattatgaagctacaaatatgagcttttgctttgatgtgattttttaa |
476 |
Q |
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| T |
33765103 |
caatttcaacgtgaaaactatgaagctacaaatctgagcttttgctttgatgtgaatttttaa |
33765041 |
T |
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