View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12767_low_9 (Length: 501)
Name: NF12767_low_9
Description: NF12767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12767_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 77 - 484
Target Start/End: Original strand, 4955516 - 4955927
Alignment:
| Q |
77 |
ttatttgcaacaaatttaggatttgtttattcacgttgtcaattttcatttcaatcaataaacattagagaatacccctttttatttacagtgctgcgaa |
176 |
Q |
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| T |
4955516 |
ttatttgcaacaaatttaggatttgtttattcacgttgtcaattttcatttcaatcaataaacattagagaataccccttttaatttacagtgctgcgaa |
4955615 |
T |
|
| Q |
177 |
tcaaacacatactcaaaaactggtcttggtattccatgcacaatcaagtaaacgacaaactcattggacnnnnnnnn-gctagctggtttgacaatatcc |
275 |
Q |
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| T |
4955616 |
tcaaacacatactcaaaaactggtcttggtattccatgcacaatcaagtaaacgacaaactcattggactttttttttgcgagctggtttgacaatatcc |
4955715 |
T |
|
| Q |
276 |
ttttttaagaaagaaattgtgactgttgagatgtcacatataagattaaaaatgactgttttggaataagttcaattagaaaaaggtatagaaaggaaca |
375 |
Q |
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| T |
4955716 |
ttttt-aacaaagaaattgtgactgttgagatgtcatatataagattaaaaatgactgttttggaataagttcaattagaaaaaggtatagaaaggaaca |
4955814 |
T |
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| Q |
376 |
ttataaattaatgcatgataatttgtctactactctatctcatgtacaggacaat-gagaaatatgagaca---tcctaaccgacagtaaaagatagtaa |
471 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| |
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| T |
4955815 |
ttataaattaatgcatgataatttgtctactactctatctcatgtacaggacaatggagaaatacgagacatcctcctaaccgacagtaaaagatagtaa |
4955914 |
T |
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| Q |
472 |
atagccttgtctt |
484 |
Q |
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| T |
4955915 |
atagccttgtctt |
4955927 |
T |
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