View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12768_high_2 (Length: 317)
Name: NF12768_high_2
Description: NF12768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12768_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 37719755 - 37719456
Alignment:
| Q |
1 |
aaatataggaaattgtgacttgtagagctagaaatctatggaattcaaatgcgaaattctcatgcacacacctcgcttttgttcgtccaggctcatccta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37719755 |
aaatataggaaattgtgacttgtagagctagaaatctatggaattcaaatgcgaaattcccatgcacacacctcgcttttgttcgtccaggctcatccta |
37719656 |
T |
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| Q |
101 |
gttataaatgaaagtgttattcaaagnnnnnnngtattcttcataaaattgaagctatcatcacattgattttattataaaattatgttactaaattgtt |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37719655 |
gttataaatgaaagtgttattcaaagaaaaaa-gtattcttcataaaattgaagctatcatcacattgattttattataaaattatgttactaaattgtt |
37719557 |
T |
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| Q |
201 |
ctctgaaatttatattgaccagtaatgatataatgtttttccttagtgccattttatcttgaatcaattgtttagcaataatttggtaaaagcgtaattt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
37719556 |
ctctgaaatttatattgaccagtaatgatataatgtttttccttagtgccattttatcttgaatcaactgtttaccaataatttggtaaaagcgtaattt |
37719457 |
T |
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