View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12769_high_2 (Length: 405)
Name: NF12769_high_2
Description: NF12769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12769_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 389
Target Start/End: Complemental strand, 13447396 - 13447027
Alignment:
| Q |
20 |
tgagtcaatcaaaagaaacgagtagaaaataattgctcaatttggttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13447396 |
tgagtcaatcaaaagaaacgagtagaaaataattgctcaatttcgttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtg |
13447297 |
T |
|
| Q |
120 |
ggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgaga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13447296 |
ggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgcgaaaattgtgccgacgatattgaga |
13447197 |
T |
|
| Q |
220 |
attactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13447196 |
attactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactt |
13447097 |
T |
|
| Q |
320 |
tgtgattcgcattcctgatagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtg |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13447096 |
tgtgattcgcattcctgatagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtg |
13447027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 32 - 389
Target Start/End: Complemental strand, 13419833 - 13419476
Alignment:
| Q |
32 |
aagaaacgagtagaaaataattgctcaatttggttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagta |
131 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||| |||||| | || |||||||| ||||| |||||| ||||| ||||||| ||||| |||||||||||| |
|
|
| T |
13419833 |
aagaaatgagtagtaaataattgttcaatttgtttataatttatttaataaatgcaggcatgaacttgcgggtatagtaaccgaggttggaagcaaagta |
13419734 |
T |
|
| Q |
132 |
aaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcacca |
231 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||||| |||||| |||||||||||||| | | |
|
|
| T |
13419733 |
gaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttgagaattactgcccaa |
13419634 |
T |
|
| Q |
232 |
aatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcat |
331 |
Q |
| |
|
|| ||| |||| || |||| |||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13419633 |
catttacagtcacatgtggtgcaaagtatcgtgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcat |
13419534 |
T |
|
| Q |
332 |
tcctgatagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtg |
389 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
13419533 |
tcctgatagcttacctcttgatgctgccggtcctcttctttgcgctggaatcacagtg |
13419476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 87 - 389
Target Start/End: Complemental strand, 13426669 - 13426367
Alignment:
| Q |
87 |
aggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtc |
186 |
Q |
| |
|
||||| |||||| ||||| | ||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13426669 |
aggcatgaacttgcgggtattgtaacagaggttggaagcaaagtagaaaagtttaaagttggagacaaagtaggagtgggatacatggttgattcatgtc |
13426570 |
T |
|
| Q |
187 |
gttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggagg |
286 |
Q |
| |
|
|||| || ||||||||||| || ||| |||||||||||||| || || | || |||| || ||||| ||||||||||| |||| |||||||| |
|
|
| T |
13426569 |
gttcatgcgaaaattgtgcggaagatcttgagaattactgcccccaacaaacagttacatgtggtgctaagtatcgtgatggcagcgtcacatatggagg |
13426470 |
T |
|
| Q |
287 |
tttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatggtgccggtcctcttctttgcgctggagtcaca |
386 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13426469 |
ttattccgactcaatggttgcagatgagcactttgtgattcgcattcctgatagcttacctcttgatgttgccggtcctcttctttgcgctggagtcaca |
13426370 |
T |
|
| Q |
387 |
gtg |
389 |
Q |
| |
|
||| |
|
|
| T |
13426369 |
gtg |
13426367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 75 - 385
Target Start/End: Complemental strand, 13413445 - 13413135
Alignment:
| Q |
75 |
tgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatgg |
174 |
Q |
| |
|
||||||||||| ||||| || ||| ||||| |||||||||| || ||||||||||| | |||||||||||||||||||||||||| || || ||| || |
|
|
| T |
13413445 |
tgtaataaatacaggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttga |
13413346 |
T |
|
| Q |
175 |
ttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactat |
274 |
Q |
| |
|
||||||||||||| || || || ||||| ||| || |||||||||||||| |||||| | |||| || |||| ||||||||| || | |
|
|
| T |
13413345 |
ttgattcatgtcgatcatgccaagattgtaatgacaatcttgagaattactgccccaaatttgtagtcacatgtggtgccaagtatcgtgatggaaccgt |
13413246 |
T |
|
| Q |
275 |
cacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatggtgccggtcctcttctttgc |
374 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| ||| |||||||| ||||| |
|
|
| T |
13413245 |
cacttatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctgacaacatacctcttgaatttgctggtcctctcctttgt |
13413146 |
T |
|
| Q |
375 |
gctggagtcac |
385 |
Q |
| |
|
||||| ||||| |
|
|
| T |
13413145 |
gctggtgtcac |
13413135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 106 - 352
Target Start/End: Original strand, 13388988 - 13389234
Alignment:
| Q |
106 |
tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgc |
205 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||| || ||||||||||||||||| || || |||||||||||||||||||| || ||| ||||||||| |
|
|
| T |
13388988 |
tagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacatggttgattcatgtcgatcatgtcaaaattgtgt |
13389087 |
T |
|
| Q |
206 |
cgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggtt |
305 |
Q |
| |
|
||| || |||| |||||||| ||| || |||| |||| || |||| ||| ||||| || | ||| |||||||||| || |||||| ||||| |
|
|
| T |
13389088 |
tgacaatcttgaaaattactgtcccacatttactttcacatgtggtgccaagtatcgcgatggaacgagcacatatggaggttattctgactcattggtt |
13389187 |
T |
|
| Q |
306 |
gcagacgagcactttgtgattcgcattcctgatagcttacctcttga |
352 |
Q |
| |
|
||||| ||| |||| ||| ||| |||||||||| | ||||| ||||| |
|
|
| T |
13389188 |
gcagatgagaacttcgtggttcacattcctgatggattaccacttga |
13389234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 13385167 - 13385288
Alignment:
| Q |
106 |
tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgc |
205 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||| || ||||||||||||||||| || || ||||| ||||||||||||| || ||| ||||||||| |
|
|
| T |
13385167 |
tagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacataattgattcatgtcgatcgtgtcaaaattgtgt |
13385266 |
T |
|
| Q |
206 |
cgacgatattgagaattactgc |
227 |
Q |
| |
|
||| || |||| ||||||||| |
|
|
| T |
13385267 |
tgacaatcttgaaaattactgc |
13385288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 13454263 - 13454143
Alignment:
| Q |
106 |
tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgc |
205 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||| ||||||||||||| |||||| ||||||| | |||||||||| |||| || ||| ||||||||| |
|
|
| T |
13454263 |
tagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgt |
13454164 |
T |
|
| Q |
206 |
cgacgatattgagaattactg |
226 |
Q |
| |
|
|| || ||||||||||||| |
|
|
| T |
13454163 |
tgataatcttgagaattactg |
13454143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 379
Target Start/End: Complemental strand, 13454089 - 13453990
Alignment:
| Q |
280 |
atggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatggtgccggtcctcttctttgcgctgg |
379 |
Q |
| |
|
||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||| ||| ||||||||||||| || | |||||| ||||| ||||| |
|
|
| T |
13454089 |
atggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattccagatcagttacctcttgatgcagctgctcctctcctttgtgctgg |
13453990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 352
Target Start/End: Original strand, 13393562 - 13393641
Alignment:
| Q |
273 |
atcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttga |
352 |
Q |
| |
|
||||| |||||||| | ||| ||||||||||||||||| ||||||||| | ||| |||||||||| ||||||| ||||| |
|
|
| T |
13393562 |
atcacatatggagggtactctgactcaatggttgcagatgagcactttatagttcacattcctgatggcttaccacttga |
13393641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 13393403 - 13393477
Alignment:
| Q |
114 |
gaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgt |
188 |
Q |
| |
|
||||| |||||||||||| | ||||| ||| ||||||||||||| || ||||||| | | |||||||| |||||| |
|
|
| T |
13393403 |
gaggtaggaagcaaagtagagaagttcaaaattggagacaaagtgggtgtgggatgcttagttgattcgtgtcgt |
13393477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 47601427 - 47601353
Alignment:
| Q |
260 |
tcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc |
334 |
Q |
| |
|
|||||||||||| | ||| || ||||||| ||| ||||||||||||| |||||||||||||||| ||| |||||| |
|
|
| T |
47601427 |
tcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcc |
47601353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 47601570 - 47601530
Alignment:
| Q |
117 |
gtgggaagcaaagtaaaaaagtttaaagttggagacaaagt |
157 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
47601570 |
gtgggaagcaaagtagaaaagttcaaagttggagacaaagt |
47601530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 376
Target Start/End: Original strand, 28430528 - 28430641
Alignment:
| Q |
263 |
tgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatggtgccggt |
362 |
Q |
| |
|
||||||||| ||||| |||||||| | ||||||| ||||||| | ||||| ||||||||| ||||||| ||||| |||||||||||| ||| | | |
|
|
| T |
28430528 |
tgatggcaccatcacatatggaggctactccgacacaatggtcaccgacgaaagctttgtgatcagcattccaaatagcctacctcttgatgctgcagct |
28430627 |
T |
|
| Q |
363 |
cctcttctttgcgc |
376 |
Q |
| |
|
||||| || ||||| |
|
|
| T |
28430628 |
cctctcctctgcgc |
28430641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University