View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12769_high_4 (Length: 323)
Name: NF12769_high_4
Description: NF12769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12769_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 5921012 - 5920713
Alignment:
| Q |
17 |
actaatcacacagttgatttttgttatcaaaaacatggccaccctagttttcctaagcaacaatctagagtaaatgcagctactcatgagatccttgatg |
116 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
5921012 |
actaatcacacaattgatttttgttatcaaaaacatggctaccctagttttcctaagcaacaatcaagaggaaatgcagctactcatgagatccttgatg |
5920913 |
T |
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| Q |
117 |
aaaatggtgcattggatcatggtttggggggctctacaggttctggtacttgtttgtctccagagcaatatactcaacttgtttcc-ttgctacaacatg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
5920912 |
aaaatggtgcattggatcatggtttggggggctctacaggttctggtacctgtttgtctccagagcaatatactcaacttgtttcctttgctacaacagg |
5920813 |
T |
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| Q |
216 |
ctagtttggtttcctcatcatctctcccttctacttcaaatgccaccaccaaccatgtccaagtcactccttttgtttctattagcatctctgcttctcc |
315 |
Q |
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| T |
5920812 |
caagtttggtttcctcatcatctctcccttctacttcaaattccaccaccaaccatatccaagtcactccttttgtttctactagcatctctgctactcc |
5920713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 26968721 - 26968778
Alignment:
| Q |
168 |
gtttgtctccagagcaatatactcaacttgtttccttgctacaacatgctagtttggt |
225 |
Q |
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|||| |||| |||||||||| ||||||| ||||||||||||||||| ||||||||||| |
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| T |
26968721 |
gtttatctcaagagcaatatgctcaactagtttccttgctacaacaggctagtttggt |
26968778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 20325317 - 20325022
Alignment:
| Q |
17 |
actaatcacacagttgatttttgttatcaaaaacatggccaccctagttttcctaagcaacaatctagagtaaatgcagctactcatgagatccttgatg |
116 |
Q |
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|||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||| ||| | ||| | |||||||||||| ||||| |
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| T |
20325317 |
actaatcacacagttgatttttgttatcaactacatggtcatcctagttttcctaagcaacaatctaaagtgactgc---ttctcatgagatccctgatg |
20325221 |
T |
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| Q |
117 |
aaaatggtgcattggatcatggtttggggggctctacaggttctggtacttgtttgtctccagagcaatatactcaacttgtttccttgctacaacatgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || || |
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| T |
20325220 |
aaaatggtgcattggatcatggtttggggggctctacaggttctggtactagtttgtctccagagcaatatactcaacttgtttccttgctgcagcaggc |
20325121 |
T |
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| Q |
217 |
tagtttggtttcctcatcatctctcccttctacttcaaatgccaccaccaaccatgtccaagtcactccttttgtttctattagcatctctgcttctcc |
315 |
Q |
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||||||| ||||||||||||||| ||| ||||||||||||| |||||||| ||||||||| ||||||||||||||| | || ||| ||||||||||| |
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| T |
20325120 |
tagtttgatttcctcatcatctcctcctcctacttcaaatgctaccaccaatcatgtccaaaccactccttttgtttccaataacatttctgcttctcc |
20325022 |
T |
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