View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12769_high_5 (Length: 318)

Name: NF12769_high_5
Description: NF12769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12769_high_5
NF12769_high_5
[»] chr3 (28 HSPs)
chr3 (2-301)||(7333749-7334048)
chr3 (102-301)||(2643936-2644147)
chr3 (102-300)||(7318485-7318703)
chr3 (102-301)||(2635981-2636201)
chr3 (180-301)||(7442648-7442768)
chr3 (180-301)||(7324100-7324222)
chr3 (180-301)||(2476894-2477017)
chr3 (189-301)||(2492360-2492472)
chr3 (180-283)||(2658815-2658919)
chr3 (180-301)||(754278-754400)
chr3 (102-300)||(2631618-2631838)
chr3 (102-185)||(9594179-9594264)
chr3 (102-269)||(767843-768029)
chr3 (181-263)||(666829-666911)
chr3 (45-100)||(2502668-2502723)
chr3 (45-100)||(7318368-7318423)
chr3 (45-100)||(7323848-7323903)
chr3 (104-172)||(7442524-7442594)
chr3 (111-185)||(2477029-2477104)
chr3 (236-301)||(2502462-2502527)
chr3 (180-284)||(9565498-9565603)
chr3 (102-171)||(7324003-7324074)
chr3 (106-171)||(9565406-9565473)
chr3 (49-100)||(2636301-2636352)
chr3 (45-100)||(2658621-2658676)
chr3 (127-185)||(7423856-7423916)
chr3 (106-171)||(754186-754253)
chr3 (231-283)||(9561705-9561758)
[»] scaffold0097 (2 HSPs)
scaffold0097 (190-284)||(34243-34336)
scaffold0097 (102-147)||(34338-34383)
[»] chr5 (3 HSPs)
chr5 (233-274)||(20301725-20301766)
chr5 (233-274)||(20306138-20306179)
chr5 (233-274)||(20310542-20310583)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 2 - 301
Target Start/End: Original strand, 7333749 - 7334048
Alignment:
Q  2 caatgcagagcaaacttatccaggcctaatacgttacaaattctataacatattcagtttagttcgtaatgcattgtgtaagatttgaaacaaacattag 101  Q
    ||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  7333749 caatgcaaaacaaacttatccaggcctaatacgtttcaaattctataacatattcagtttagttcataatgcattgtgtaagatttgaaacaaacatgag 7333848  T
Q  102 gaactatttaaaatatagtgcaagatgtgagcgaatcaacaactcattaaccaaactattgaaaataaaaagcagtgttcaaccattgattaacaatgat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7333849 gaactatttaaaatatagtgcaagatgtgagcgaatcaacaactcattaaccaaactattgaaaataaaaagcagtgttcaaccattgattaacaatgat 7333948  T
Q  202 ctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagggcgatatc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7333949 ctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagggcgatatc 7334048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 102 - 301
Target Start/End: Original strand, 2643936 - 2644147
Alignment:
Q  102 gaactatttaaaatatagtgcaagatgtgagcgaatcaacaactc--attaaccaaactattgaaaataaaaagcagtgttcaacc--------attgat 191  Q
    ||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||| || |||| |         | |||    
T  2643936 gaactatttaaaatatagtgcaagatgtgagagaatcaacaactcaaattaaccaaactattgaaaataaaaagcaatgatcaagctataactagtagat 2644035  T
Q  192 taacaatgatctaacaagtcatgaataatcaaagcagggata--aaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagct 289  Q
    ||| ||||||||||||||| || || ||| | |||||| |||  | |||||||||||| | |||||||||||||||||||||||| ||||||||||||||    
T  2644036 taataatgatctaacaagtaatcaagaattagagcaggcataacatataaataacacagacaaaaactaaccatatatatgttgcagttgaatcccagct 2644135  T
Q  290 tagggcgatatc 301  Q
    || || ||||||    
T  2644136 taaggtgatatc 2644147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 102 - 300
Target Start/End: Original strand, 7318485 - 7318703
Alignment:
Q  102 gaactatttaaaatatagtgcaagatgtgagcgaatcaacaactca-ttaaccaaactattgaaaataaaaagcagtgttcaa----------------c 184  Q
    ||||||||||||||||| || || ||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||                |    
T  7318485 gaactatttaaaatataatggaatatgtgagagaatcaacaactcaattaaccaaactattgaaaataaaaagcaatgttcaagctatagctccattaac 7318584  T
Q  185 cattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaata--aataacacaaataaaa-actaaccatatatatgttgccgttgaa 281  Q
    |||||||||| |||||||||||||||||| || ||||| |||||| |||| |||  ||||||||||| |||| |||||||||||||||||||| ||||||    
T  7318585 cattgattaataatgatctaacaagtcatcaagaatcagagcaggcataacatataaataacacaaacaaaaaactaaccatatatatgttgcagttgaa 7318684  T
Q  282 tcccagcttagggcgatat 300  Q
    |||||||||| || |||||    
T  7318685 tcccagcttaaggtgatat 7318703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 102 - 301
Target Start/End: Complemental strand, 2636201 - 2635981
Alignment:
Q  102 gaactatttaaaatatagtgcaagatgtgagcgaatcaacaactc--attaaccaaactattgaaaataaaaagcagtgt-----------------tca 182  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |  ||||||||||||| ||||||||||||||| |||                 |||    
T  2636201 gaactatttaaaatatagtgcaagatgtgagagaatcaacaacacaaattaaccaaactactgaaaataaaaagcaatgttcaacctatagattccatca 2636102  T
Q  183 accattgattaacaatgatctaacaagtcatgaataatcaaagcagggata--aaataaataacacaaataaaaactaaccatatatatgttgccgttga 280  Q
    ||||||||||||||||||||||||||||||  || ||||| |  ||| |||  | |||||||||||| | |||||||||||||||||||||||| | |||    
T  2636101 accattgattaacaatgatctaacaagtcaccaagaatcagattaggcataatacataaataacacagacaaaaactaaccatatatatgttgcagatga 2636002  T
Q  281 atcccagcttagggcgatatc 301  Q
    |||||| |||| || ||||||    
T  2636001 atcccaacttaaggtgatatc 2635981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 180 - 301
Target Start/End: Original strand, 7442648 - 7442768
Alignment:
Q  180 tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaa--actaaccatatatatgttgccgt 277  Q
    ||||||||||||||||||||||| |||||||||  || ||||| |   |   |||||||||||||||||||||||  |||||||||||||||||||||||    
T  7442648 tcaaccattgattaacaatgatccaacaagtcacaaaaaatcagatgtg---taaaataaataacacaaataaaaaaactaaccatatatatgttgccgt 7442744  T
Q  278 tgaatcccagcttagggcgatatc 301  Q
    ||||||||||||||||||||||||    
T  7442745 tgaatcccagcttagggcgatatc 7442768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 301
Target Start/End: Original strand, 7324100 - 7324222
Alignment:
Q  180 tcaaccatt-gattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgtt 278  Q
    ||||||||| |||||||||||||| |||||||||  || ||||| ||||||  ||||| ||| |||||||| |||||||||||||||||||||||| |||    
T  7324100 tcaaccattagattaacaatgatccaacaagtcaacaaaaatcagagcaggcgtaaaacaaacaacacaaacaaaaactaaccatatatatgttgcagtt 7324199  T
Q  279 gaatcccagcttagggcgatatc 301  Q
    ||||||||||||| || ||||||    
T  7324200 gaatcccagcttaaggtgatatc 7324222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 180 - 301
Target Start/End: Complemental strand, 2477017 - 2476894
Alignment:
Q  180 tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataa--aaactaaccatatatatgttgccgt 277  Q
    ||||||||||||||||||||||| ||||| | |  || | |||||||||| ||||||||||||||||||  ||  |||||||||||||||||||||  ||    
T  2477017 tcaaccattgattaacaatgatccaacaaataaccaagactcaaagcaggcataaaataaataacacaacaaagaaaactaaccatatatatgttggagt 2476918  T
Q  278 tgaatcccagcttagggcgatatc 301  Q
    |||||||||||||| || ||||||    
T  2476917 tgaatcccagcttaaggtgatatc 2476894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 189 - 301
Target Start/End: Complemental strand, 2492472 - 2492360
Alignment:
Q  189 gattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagc 288  Q
    |||||||||||||| ||||||||| ||| ||||| |||| |  |||||||||||||||| | ||||||||||||||||||||  || |||||||||||||    
T  2492472 gattaacaatgatccaacaagtcaagaaaaatcagagcatgcgtaaaataaataacacacacaaaaactaaccatatatatgccgcagttgaatcccagc 2492373  T
Q  289 ttagggcgatatc 301  Q
    ||| || ||||||    
T  2492372 ttaaggtgatatc 2492360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 2658815 - 2658919
Alignment:
Q  180 tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaata--aataacacaaataaaaactaaccatatatatgttgccgt 277  Q
    ||||||||| |||||||||||||||||||||||  || ||||| |||||| |||| |||  ||||||||||| |||||||||||||||||||||||| ||    
T  2658815 tcaaccattaattaacaatgatctaacaagtcaccaa-aatcagagcaggcataacatataaataacacaaacaaaaactaaccatatatatgttgcagt 2658913  T
Q  278 tgaatc 283  Q
    ||||||    
T  2658914 tgaatc 2658919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 301
Target Start/End: Original strand, 754278 - 754400
Alignment:
Q  180 tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaa-ataaaaactaaccatatatatgttgccgtt 278  Q
    |||||||||||||| |||||||| ||||| |||  || ||||||| |||  |||||||||||||||||| | ||||||||||||| |||||||||| |||    
T  754278 tcaaccattgattagcaatgatccaacaaatcaccaagaatcaaatcagacataaaataaataacacaatacaaaaactaaccatgtatatgttgcagtt 754377  T
Q  279 gaatcccagcttagggcgatatc 301  Q
    ||||||  ||||| || ||||||    
T  754378 gaatccttgcttaaggtgatatc 754400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 300
Target Start/End: Complemental strand, 2631838 - 2631618
Alignment:
Q  102 gaactatttaaaatatagtgcaagatgtgagcgaatcaacaactca--ttaaccaaactattgaaaataaaaagcagtgt-----------------tca 182  Q
    ||||||||||||||||||||||||||||||| | |   ||||||||  |||||||||||||||||||||||||||| | |                 |||    
T  2631838 gaactatttaaaatatagtgcaagatgtgagagta---acaactcaaattaaccaaactattgaaaataaaaagcaattttcaacctacagattccatca 2631742  T
Q  183 accattgattaacaatgatctaacaagtcatgaataatcaaagcag-----ggataaaataaataacacaaata-aaaactaaccatatatatgttgccg 276  Q
    |||||||||||||||||||| |||||||||  || |||||||||||       ||||||||||||||| ||| | |||||||||||| |||||||||| |    
T  2631741 accattgattaacaatgatccaacaagtcactaagaatcaaagcagacataaaataaaataaataacataaacataaaactaaccatgtatatgttgcag 2631642  T
Q  277 ttgaatcccagcttagggcgatat 300  Q
    ||||||||||||||| || |||||    
T  2631641 ttgaatcccagcttaaggtgatat 2631618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 9594179 - 9594264
Alignment:
Q  102 gaactatttaaaatatagtgcaagatgtgagcgaatcaacaactc--attaaccaaactattgaaaataaaaagcagtgttcaacc 185  Q
    |||||||||||||||||||||||||| || | |||||||||||||  ||||||||||||||||||||||| ||||| |||| ||||    
T  9594179 gaactatttaaaatatagtgcaagatatgtgagaatcaacaactcaaattaaccaaactattgaaaataagaagcaatgttgaacc 9594264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 269
Target Start/End: Original strand, 767843 - 768029
Alignment:
Q  102 gaactatttaaaatatagtgcaagatgtgagcgaatcaacaactca--ttaaccaaactattgaaaataaaaagcagtgtt-----------------ca 182  Q
    |||| |||||||||||||||||||||||||| |||| |||||||||  |||||||||||||||||||| |||| || ||||                 ||    
T  767843 gaacaatttaaaatatagtgcaagatgtgagagaattaacaactcaaattaaccaaactattgaaaattaaaa-caatgttgaacctatatattccatca 767941  T
Q  183 accattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacaca-aataaaaactaaccatatatat 269  Q
    |||||||||||||||||||| ||||| |||  || |||||||||||  ||||||||||||||||| |  |||||||||||||||||||    
T  767942 accattgattaacaatgatccaacaaatcaccaagaatcaaagcagatataaaataaataacacagacaaaaaactaaccatatatat 768029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 666829 - 666911
Alignment:
Q  181 caaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccat 263  Q
    |||||||||||||||||||||| |||||||||  || |||||||| | | ||||||||||| ||||||| |||||||||||||    
T  666829 caaccattgattaacaatgatccaacaagtcaccaagaatcaaaggaagcataaaataaattacacaaacaaaaactaaccat 666911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 2502723 - 2502668
Alignment:
Q  45 tataacatattcagtttagttcgtaatgcattgtgtaagatttgaaacaaacatta 100  Q
    |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||    
T  2502723 tataacatattcagtttagttcataatgcattgtgcaagatttgaagcaaacatta 2502668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 7318368 - 7318423
Alignment:
Q  45 tataacatattcagtttagttcgtaatgcattgtgtaagatttgaaacaaacatta 100  Q
    |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||    
T  7318368 tataacatattcagtttagttcataatgcattgtgcaagatttgaagcaaacatta 7318423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 7323848 - 7323903
Alignment:
Q  45 tataacatattcagtttagttcgtaatgcattgtgtaagatttgaaacaaacatta 100  Q
    ||||||||||| |||||||||| |||||||||||| |||||||||| |||||||||    
T  7323848 tataacatatttagtttagttcataatgcattgtgcaagatttgaagcaaacatta 7323903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 7442524 - 7442594
Alignment:
Q  104 actatttaaaatatagtgcaagatgtgagcgaatcaacaactca--ttaaccaaactattgaaaataaaaa 172  Q
    ||||||||||||||| ||||||||| |||  |||| ||||||||  |||||||||||||||||||||||||    
T  7442524 actatttaaaatataatgcaagatgcgagaaaatctacaactcaaattaaccaaactattgaaaataaaaa 7442594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 2477104 - 2477029
Alignment:
Q  111 aaaatatagtgcaagatgtgagcgaatcaacaactc--attaaccaaactattgaaaataaaaagcagtgttcaacc 185  Q
    |||| ||||||||| ||||||| |||||||||||||  | ||||||||||||||||||| ||||||| |||||||||    
T  2477104 aaaagatagtgcaaaatgtgagagaatcaacaactcaaactaaccaaactattgaaaat-aaaagcaatgttcaacc 2477029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 301
Target Start/End: Complemental strand, 2502527 - 2502462
Alignment:
Q  236 ataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagggcgatatc 301  Q
    |||||||||| |||| ||||||||||||||||||||||| |||||||||  ||||| || ||||||    
T  2502527 ataaataacagaaattaaaactaaccatatatatgttgcagttgaatccatgcttaaggtgatatc 2502462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 284
Target Start/End: Original strand, 9565498 - 9565603
Alignment:
Q  180 tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacaca-aataaaaactaaccatatatatgttgccgtt 278  Q
    |||||||||||||| |||||||| ||||| |||  || ||||||| |||  |||||||||||||||||  | |||||||||||||||  |||||||  ||    
T  9565498 tcaaccattgattagcaatgatccaacaaatcaccaagaatcaaatcagacataaaataaataacacagtaaaaaaactaaccatatcaatgttgcattt 9565597  T
Q  279 gaatcc 284  Q
    ||||||    
T  9565598 gaatcc 9565603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 7324003 - 7324074
Alignment:
Q  102 gaactatttaaaatatagtgcaagatgtgagcgaatcaacaactc--attaaccaaactattgaaaataaaa 171  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||  ||||| ||||||  |||||||||||    
T  7324003 gaactatttaaaatataatgcaatatgtgagagaatcaacaactcaaattaatcaaactgatgaaaataaaa 7324074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 9565406 - 9565473
Alignment:
Q  106 tatttaaaatatagtgcaagatgtgagcgaatcaacaactc--attaaccaaactattgaaaataaaa 171  Q
    ||||||||||||| ||||||||  ||| |||||||||||||  |||||||| ||||||||||||||||    
T  9565406 tatttaaaatataatgcaagattagagagaatcaacaactcaaattaaccatactattgaaaataaaa 9565473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 2636352 - 2636301
Alignment:
Q  49 acatattcagtttagttcgtaatgcattgtgtaagatttgaaacaaacatta 100  Q
    |||||||||||||||||| |||| ||||||| || |||||||||||||||||    
T  2636352 acatattcagtttagttcataatccattgtgcaatatttgaaacaaacatta 2636301  T

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Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 2658621 - 2658676
Alignment:
Q  45 tataacatattcagtttagttcgtaatgcattgtgtaagatttgaaacaaacatta 100  Q
    ||||||||||||||||| |||| ||||||| |||| |||||||||| |||||||||    
T  2658621 tataacatattcagtttggttcataatgcagtgtgcaagatttgaagcaaacatta 2658676  T

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Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 7423856 - 7423916
Alignment:
Q  127 tgtgagcgaatcaacaactca--ttaaccaaactattgaaaataaaaagcagtgttcaacc 185  Q
    |||||| ||||||||||||||  ||||||||||||||||||||||||| || |||| ||||    
T  7423856 tgtgagagaatcaacaactcaaattaaccaaactattgaaaataaaaaccactgttgaacc 7423916  T

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Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 754186 - 754253
Alignment:
Q  106 tatttaaaatatagtgcaagatgtgagcgaatcaacaactc--attaaccaaactattgaaaataaaa 171  Q
    ||||||||||||| ||||||||   || |||||||||||||  |||||||| ||||||||||||||||    
T  754186 tatttaaaatataatgcaagattaaagagaatcaacaactcaaattaaccatactattgaaaataaaa 754253  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 9561705 - 9561758
Alignment:
Q  231 ataaaataaataacacaaataaaa-actaaccatatatatgttgccgttgaatc 283  Q
    |||||||||  |||||||| |||| |||||||||||||||||||| ||||||||    
T  9561705 ataaaataatcaacacaaacaaaaaactaaccatatatatgttgcagttgaatc 9561758  T

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Target: scaffold0097 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 284
Target Start/End: Complemental strand, 34336 - 34243
Alignment:
Q  190 attaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcc 284  Q
    ||||||||||||| |||||||||  || ||||| |||||| |||| |||||||||||||| |||||||||||||||||||||||| |||||||||    
T  34336 attaacaatgatcaaacaagtcaccaa-aatcagagcaggcataacataaataacacaaacaaaaactaaccatatatatgttgcagttgaatcc 34243  T

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Target: scaffold0097; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 34383 - 34338
Alignment:
Q  102 gaactatttaaaatatagtgcaagatgtgagcgaatcaacaactca 147  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  34383 gaactatttaaaatatagtgcaagatgtgagagaatcaacaactca 34338  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 20301766 - 20301725
Alignment:
Q  233 aaaataaataacacaaataaaaactaaccatatatatgttgc 274  Q
    ||||||||||||||||| | ||||||||||||| ||||||||    
T  20301766 aaaataaataacacaaacagaaactaaccatatctatgttgc 20301725  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 20306179 - 20306138
Alignment:
Q  233 aaaataaataacacaaataaaaactaaccatatatatgttgc 274  Q
    ||||||||||||||||| | ||||||||||||| ||||||||    
T  20306179 aaaataaataacacaaacagaaactaaccatatctatgttgc 20306138  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 20310583 - 20310542
Alignment:
Q  233 aaaataaataacacaaataaaaactaaccatatatatgttgc 274  Q
    ||||||||||||||||| | ||||||||||||| ||||||||    
T  20310583 aaaataaataacacaaacagaaactaaccatatctatgttgc 20310542  T

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