View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12769_high_6 (Length: 307)

Name: NF12769_high_6
Description: NF12769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12769_high_6
NF12769_high_6
[»] chr2 (1 HSPs)
chr2 (1-286)||(44632200-44632494)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 44632494 - 44632200
Alignment:
Q  1 cagagagtgtgacagtatatacccataactaccaacctgctacattttactacaatgcttttatccctaatggtgtttggtatggttttgattattgtcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44632494 cagagagtgtgacagtatatacccataactaccaacctgctactttttactacaatgcttttatccctaatggtgtttggtatggttttgattattgtcg 44632395  T
Q  101 tggttacttaccctccactgctactgct---------gctgctgcactctagtgtagttgatcttcttagtttatgaataagataataatgtagttttcc 191  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44632394 tggttacttaccctccactgctactgctactgctgctgctgctgcactctagtgtagttgatcttcttagtttatgaataagataataatgtagttttcc 44632295  T
Q  192 aactgtgaaaccctctgttatatgcgggattagtggtccttctataagcccttcttttacatggaaatgtttgtttgtaggttttactgtctgtg 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44632294 aactgtgaaaccctctgttatatgcgggattagtggtccttctataagcccttcttttatatggaaatgtttgtttgtaggttttactgtctgtg 44632200  T

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