View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12769_low_1 (Length: 745)

Name: NF12769_low_1
Description: NF12769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12769_low_1
NF12769_low_1
[»] chr5 (3 HSPs)
chr5 (11-726)||(19167417-19168133)
chr5 (139-205)||(16207560-16207626)
chr5 (138-174)||(30080442-30080478)
[»] chr6 (4 HSPs)
chr6 (171-262)||(1334629-1334719)
chr6 (137-238)||(19369809-19369913)
chr6 (166-205)||(6751878-6751917)
chr6 (171-205)||(785456-785490)
[»] chr7 (2 HSPs)
chr7 (171-262)||(1885541-1885631)
chr7 (165-205)||(25956469-25956509)
[»] chr2 (4 HSPs)
chr2 (138-199)||(18512110-18512171)
chr2 (165-262)||(43586000-43586096)
chr2 (135-205)||(8300184-8300254)
chr2 (138-205)||(37211853-37211920)
[»] chr4 (2 HSPs)
chr4 (157-205)||(13117453-13117501)
chr4 (172-244)||(37496690-37496761)
[»] chr8 (1 HSPs)
chr8 (137-205)||(24295104-24295172)
[»] chr3 (1 HSPs)
chr3 (165-205)||(14338478-14338518)


Alignment Details
Target: chr5 (Bit Score: 610; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 11 - 726
Target Start/End: Original strand, 19167417 - 19168133
Alignment:
Q  11 gaagcaaagggtacacaatcattcttaaatcaatgataacagatggaagcttcatgcccaaaatcatgacaaacatgacactgaatagaattgcagccat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19167417 gaagcaaagggtacacaatcattcttaaatcaatgataacagatggaagcttcatgcccaaaatcatgacaaacatgacactgaatagaattgcagccat 19167516  T
Q  111 atgaaatattgtcctatatttcatatggacacttctaattgaaggagtgtcccggtgtctgacaccgacacttgtgattacattgaattgtgtcannnnn 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  19167517 atgaaatattgtcctatatttcatatggacacttctaattgaaggagtgtcccggtgtctgacaccgacacttgtgattacattgaattgtgtcattttt 19167616  T
Q  211 nncaaaattttatcggtgtcaacgtgtctgtgtcagtgtcgtgtccggtgtctgttcttcataaataggacacaatgttatgagtacaaataaatatact 310  Q
      ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || ||||||||    
T  19167617 ttcaaaattttatcggtgtcaacgtgtctgtgtcagtgtcgtgtctggtgtctgttcttcataaataggacacaatgttatcagtacagatgaatatact 19167716  T
Q  311 atttcaattttactttgttactacttttctatccttcgactataattttgataggttaagtattggtgaagaagtgcccccacttgtgttccaggttatg 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19167717 atttcaattttactttgttactacttttctatccttcgactataattttgataggttaagtattggtgaagaagtgcccccacttgtgttctaggttatg 19167816  T
Q  411 tgctatttttcgttgtcagtctcaacaacatataaataactcaattatctataattgttagcatctaaaccacgattatcttatccactctacaaaggtg 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19167817 tgctatttttcgttgtcagtctcaacaacatataaataactcaattatctataattgttagcatctaaaccacgattatcttatccactctacaaaggtg 19167916  T
Q  511 aaagtgattgcacaaaaactaaccttgaatgcacctaattttccatctttagtgcgtgttccctccgggaagaaaaagacagaggctccnnnnnnnatca 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || |    
T  19167917 aaagtgattgcacaaaaactaaccttgaatgcacctaattttccatctttagtgcgtgttccctccgggaagaaaaagacagaggctcctttcttgatga 19168016  T
Q  611 gatccatgcatcgtttaagacagtcctatacatgaagaagcatttaaccaataagttggtaaaattaggtac-nnnnnnncaatggttgaagaatgctac 709  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||        ||||||||||||||||||||    
T  19168017 gatcaatgcatcgtttaagacagtcctatacatgaagaagcatttaaccaataagttcataaaattaggtacacaaaaaacaatggttgaagaatgctac 19168116  T
Q  710 taccatacataccatct 726  Q
    |||||||||||||||||    
T  19168117 taccatacataccatct 19168133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 16207560 - 16207626
Alignment:
Q  139 acacttctaattgaaggagtgtcccggtgtctgacaccgacacttgtgattacattgaattgtgtca 205  Q
    |||||||||||||| || |||||   |||||||||||| |||||||||||||||||||||| |||||    
T  16207560 acacttctaattgacggtgtgtcttagtgtctgacaccaacacttgtgattacattgaattatgtca 16207626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 30080442 - 30080478
Alignment:
Q  138 gacacttctaattgaaggagtgtcccggtgtctgaca 174  Q
    |||||||||||||||||||||||||||||||| ||||    
T  30080442 gacacttctaattgaaggagtgtcccggtgtccgaca 30080478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 1334719 - 1334629
Alignment:
Q  171 gacaccgacacttgtgattacattgaattgtgtcannnnnnncaaaattttatcggtgtcaacgtgtctgtgtcagtgtcgtgtccggtgtc 262  Q
    |||||||||| |||||||||||||||||| ||||        |||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  1334719 gacaccgacatttgtgattacattgaattatgtc-cttttttcaaaattttatccgtgtcaatgtgtctgtgtcagtgtcgtgtccggtgtc 1334629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 19369913 - 19369809
Alignment:
Q  137 ggacacttctaattgaaggagtgtcccggtgtct----gacaccgacacttgtgattacattgaattgtgtcannnnnnncaaaattttatcggtgtcaa 232  Q
    |||||||||| |||||||| ||||| |||||||     ||||||||||||||||||||||||||||| |||||       |||||||||||| |||||||    
T  19369913 ggacacttctgattgaaggcgtgtctcggtgtcgacacgacaccgacacttgtgattacattgaattatgtca-ttttctcaaaattttatccgtgtcaa 19369815  T
Q  233 cgtgtc 238  Q
    ||||||    
T  19369814 cgtgtc 19369809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 6751878 - 6751917
Alignment:
Q  166 tgtctgacaccgacacttgtgattacattgaattgtgtca 205  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  6751878 tgtccgacaccgacacttgtgattacattgaattatgtca 6751917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 785456 - 785490
Alignment:
Q  171 gacaccgacacttgtgattacattgaattgtgtca 205  Q
    ||||||||||||||||||||||||||||| |||||    
T  785456 gacaccgacacttgtgattacattgaattatgtca 785490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 1885631 - 1885541
Alignment:
Q  171 gacaccgacacttgtgattacattgaattgtgtcannnnnnncaaaattttatcggtgtcaacgtgtctgtgtcagtgtcgtgtccggtgtc 262  Q
    ||||||||||||||||||||||||||||| |||||       |||||||||||| ||||| | ||||| || ||||||||||||||||||||    
T  1885631 gacaccgacacttgtgattacattgaattatgtca-ttttttcaaaattttatccgtgtcgatgtgtccgtatcagtgtcgtgtccggtgtc 1885541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 25956509 - 25956469
Alignment:
Q  165 gtgtctgacaccgacacttgtgattacattgaattgtgtca 205  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  25956509 gtgtccgacaccgacacttgtgattacattgaattatgtca 25956469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 18512110 - 18512171
Alignment:
Q  138 gacacttctaattgaaggagtgtcccggtgtctgacaccgacacttgtgattacattgaatt 199  Q
    ||||||||| |||||||| |||||||||||| |||||| ||||| |||||||||||||||||    
T  18512110 gacacttctgattgaaggtgtgtcccggtgtgtgacactgacacatgtgattacattgaatt 18512171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 262
Target Start/End: Original strand, 43586000 - 43586096
Alignment:
Q  165 gtgtctgacaccgacacttgtgattacattgaattgtgtcannnnnnncaaaattttatcggtgtcaacgtgtctgtgtcagtgtcgtgtccggtgtc 262  Q
    ||||| ||||||||||||||||||||||||||||| |||||       |||||||||||| ||||  ||||||| ||||||||  |||||||||||||    
T  43586000 gtgtccgacaccgacacttgtgattacattgaattatgtca-ttttctcaaaattttatctgtgttgacgtgtcagtgtcagtaccgtgtccggtgtc 43586096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 8300184 - 8300254
Alignment:
Q  135 atggacacttctaattgaaggagtgtcccggtgtctgacaccgacacttgtgattacattgaattgtgtca 205  Q
    |||||||||||| |||||||| |||||||||||||  |||||||||||| |||||||| | |||| |||||    
T  8300184 atggacacttctgattgaaggcgtgtcccggtgtccaacaccgacacttatgattacactaaattatgtca 8300254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 37211853 - 37211920
Alignment:
Q  138 gacacttctaattgaaggagtgtcccggtgtctgacaccgacacttgtgattacattgaattgtgtca 205  Q
    |||| ||||||||||||| || |||| ||||| ||||  ||||||||| |||||||||||||||||||    
T  37211853 gacaattctaattgaaggcgtatcccagtgtccgacatagacacttgtaattacattgaattgtgtca 37211920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 13117501 - 13117453
Alignment:
Q  157 gtgtcccggtgtctgacaccgacacttgtgattacattgaattgtgtca 205  Q
    ||||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  13117501 gtgtcccagtgtccgacaccgacacttgtgattacattgaattttgtca 13117453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 37496761 - 37496690
Alignment:
Q  172 acaccgacacttgtgattacattgaattgtgtcannnnnnncaaaattttatcggtgtcaacgtgtctgtgtc 244  Q
    |||||||||||||||||||||||||||| |||||       |||||  ||||||||||||||||||| |||||    
T  37496761 acaccgacacttgtgattacattgaattatgtca-ttttctcaaaaaattatcggtgtcaacgtgtcagtgtc 37496690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 24295104 - 24295172
Alignment:
Q  137 ggacacttctaattgaaggagtgtcccggtgtctgacaccgacacttgtgattacattgaattgtgtca 205  Q
    |||| ||||| ||||||||  || |||||  || |||||||||||||||||||||||| ||||||||||    
T  24295104 ggacgcttctgattgaaggcatgccccggcatcagacaccgacacttgtgattacattaaattgtgtca 24295172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 14338478 - 14338518
Alignment:
Q  165 gtgtctgacaccgacacttgtgattacattgaattgtgtca 205  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  14338478 gtgtctgacaccgacatttgtgattacattgaattatgtca 14338518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University